Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS17360

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS17350 and RR42_RS17355 are separated by 62 nucleotidesRR42_RS17355 and RR42_RS17360 are separated by 55 nucleotidesRR42_RS17360 and RR42_RS17365 are separated by 65 nucleotides RR42_RS17350: RR42_RS17350 - twitching motility protein PilT, at 3,755,168 to 3,756,211 _RS17350 RR42_RS17355: RR42_RS17355 - hypothetical protein, at 3,756,274 to 3,757,002 _RS17355 RR42_RS17360: RR42_RS17360 - pyrroline-5-carboxylate reductase, at 3,757,058 to 3,757,882 _RS17360 RR42_RS17365: RR42_RS17365 - 4-hydroxybenzoate polyprenyltransferase, at 3,757,948 to 3,758,841 _RS17365 Position (kb) 3757 3758Strain fitness (log2 ratio) -2 -1 0 1 2at 3756.058 kb on - strand, within RR42_RS17350at 3756.058 kb on - strand, within RR42_RS17350at 3756.058 kb on - strand, within RR42_RS17350at 3756.058 kb on - strand, within RR42_RS17350at 3756.058 kb on - strand, within RR42_RS17350at 3756.113 kb on - strandat 3756.191 kb on + strandat 3756.191 kb on + strandat 3756.195 kb on - strandat 3756.213 kb on + strandat 3756.213 kb on + strandat 3756.213 kb on + strandat 3756.213 kb on + strandat 3756.214 kb on - strandat 3756.214 kb on - strandat 3756.214 kb on - strandat 3756.214 kb on - strandat 3756.215 kb on + strandat 3756.215 kb on + strandat 3756.238 kb on + strandat 3756.238 kb on + strandat 3756.249 kb on + strandat 3756.259 kb on + strandat 3756.273 kb on + strandat 3756.445 kb on + strand, within RR42_RS17355at 3757.961 kb on + strandat 3757.961 kb on + strandat 3757.961 kb on + strandat 3757.961 kb on + strandat 3757.962 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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3,756,058 - RR42_RS17350 0.85 +0.3
3,756,058 - RR42_RS17350 0.85 +1.4
3,756,058 - RR42_RS17350 0.85 +0.9
3,756,058 - RR42_RS17350 0.85 +0.9
3,756,058 - RR42_RS17350 0.85 +0.1
3,756,113 - -0.0
3,756,191 + -0.7
3,756,191 + +0.3
3,756,195 - -0.9
3,756,213 + -1.4
3,756,213 + +0.4
3,756,213 + +1.1
3,756,213 + -0.3
3,756,214 - +0.6
3,756,214 - +0.1
3,756,214 - +1.6
3,756,214 - +1.8
3,756,215 + +0.6
3,756,215 + -1.1
3,756,238 + -2.4
3,756,238 + +0.2
3,756,249 + -2.3
3,756,259 + +1.0
3,756,273 + +0.5
3,756,445 + RR42_RS17355 0.23 +1.9
3,757,961 + +0.1
3,757,961 + -1.1
3,757,961 + -0.4
3,757,961 + -2.5
3,757,962 - +1.6

Or see this region's nucleotide sequence