Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16885

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
3,649,967	-		RR42_RS16875	0.68	-0.2
3,650,018	+		RR42_RS16875	0.73	+1.2
3,650,018	+		RR42_RS16875	0.73	+0.6
3,650,018	+		RR42_RS16875	0.73	-0.0
3,650,019	-		RR42_RS16875	0.73	-1.8
3,650,019	-		RR42_RS16875	0.73	-0.6
3,650,072	+		RR42_RS16875	0.78	-0.5
3,650,073	-		RR42_RS16875	0.79	+0.1
3,650,183	+		RR42_RS16875	0.89	-0.3
3,650,183	+		RR42_RS16875	0.89	-1.2
3,650,183	+		RR42_RS16875	0.89	-0.7
3,650,183	+		RR42_RS16875	0.89	+0.8
3,650,183	+		RR42_RS16875	0.89	-1.4
3,650,184	-		RR42_RS16875	0.89	-2.4
3,650,184	-		RR42_RS16875	0.89	-0.1
3,650,184	-		RR42_RS16875	0.89	-1.0
3,650,184	-		RR42_RS16875	0.89	+0.2
3,650,244	-				-2.7
3,650,244	-				-0.0
3,650,288	+				+0.4
3,650,289	-				+0.4
3,650,338	+				-0.0
3,650,558	+		RR42_RS16880	0.49	+2.4
3,650,805	+				+1.2
3,650,881	+				-0.3
3,650,997	-				+1.1
3,650,997	-				+0.2
3,651,115	+				-1.5
3,651,155	+				+0.1
3,651,155	+				+0.7
3,651,155	+				-0.6
3,651,238	+		RR42_RS16885	0.11	-1.1
3,651,238	+		RR42_RS16885	0.11	-0.4
3,651,326	+		RR42_RS16885	0.13	-1.0
3,651,326	+		RR42_RS16885	0.13	+1.6
3,651,327	-		RR42_RS16885	0.13	-1.1
3,651,327	-		RR42_RS16885	0.13	+0.4
3,651,440	+		RR42_RS16885	0.17	+1.0
3,651,440	+		RR42_RS16885	0.17	+0.1
3,651,440	+		RR42_RS16885	0.17	+0.3
3,651,441	-		RR42_RS16885	0.17	-0.9
3,651,441	-		RR42_RS16885	0.17	+1.1
3,651,441	-		RR42_RS16885	0.17	-0.6
3,651,485	+		RR42_RS16885	0.18	-1.3
3,651,485	+		RR42_RS16885	0.18	+0.5
3,651,485	+		RR42_RS16885	0.18	+0.3
3,651,485	+		RR42_RS16885	0.18	-2.0
3,651,485	+		RR42_RS16885	0.18	+0.5
3,651,485	+		RR42_RS16885	0.18	+0.1
3,651,485	+		RR42_RS16885	0.18	+0.8
3,651,485	+		RR42_RS16885	0.18	+0.9
3,651,485	+		RR42_RS16885	0.18	-1.2
3,651,485	+		RR42_RS16885	0.18	+0.3
3,651,486	-		RR42_RS16885	0.18	+0.4
3,651,486	-		RR42_RS16885	0.18	-1.5
3,651,486	-		RR42_RS16885	0.18	-2.4
3,651,486	-		RR42_RS16885	0.18	-0.3
3,651,486	-		RR42_RS16885	0.18	+1.0
3,651,486	-		RR42_RS16885	0.18	+0.2
3,651,486	-		RR42_RS16885	0.18	-0.4
3,651,487	+		RR42_RS16885	0.18	+0.4
3,651,605	+		RR42_RS16885	0.22	-0.7
3,651,605	+		RR42_RS16885	0.22	-0.3
3,651,614	+		RR42_RS16885	0.22	-1.4
3,651,654	-		RR42_RS16885	0.24	-0.8
3,651,666	+		RR42_RS16885	0.24	+0.0
3,651,666	+		RR42_RS16885	0.24	-1.0
3,651,667	-		RR42_RS16885	0.24	+0.2
3,651,704	+		RR42_RS16885	0.25	+0.9
3,651,705	-		RR42_RS16885	0.25	-0.0
3,651,740	+		RR42_RS16885	0.26	+0.0
3,651,741	-		RR42_RS16885	0.26	+0.9
3,651,757	+		RR42_RS16885	0.27	-0.1
3,651,757	+		RR42_RS16885	0.27	+0.6
3,651,757	+		RR42_RS16885	0.27	-0.8
3,651,758	-		RR42_RS16885	0.27	-0.5
3,651,788	+		RR42_RS16885	0.28	-0.2
3,651,789	-		RR42_RS16885	0.28	-0.4
3,651,932	+		RR42_RS16885	0.32	+0.0
3,651,932	+		RR42_RS16885	0.32	-0.4
3,651,996	-		RR42_RS16885	0.34	+0.6
3,651,996	-		RR42_RS16885	0.34	+0.8
3,652,025	-		RR42_RS16885	0.35	+0.9
3,652,030	-		RR42_RS16885	0.35	+1.1
3,652,030	-		RR42_RS16885	0.35	+0.5
3,652,104	-		RR42_RS16885	0.38	-1.6
3,652,146	-		RR42_RS16885	0.39	-2.0
3,652,146	-		RR42_RS16885	0.39	+0.7
3,652,308	+		RR42_RS16885	0.44	+0.3
3,652,378	+		RR42_RS16885	0.46	-0.6
3,652,378	+		RR42_RS16885	0.46	-0.0
3,652,378	+		RR42_RS16885	0.46	-0.3
3,652,378	+		RR42_RS16885	0.46	-0.4
3,652,378	+		RR42_RS16885	0.46	+0.1
3,652,378	+		RR42_RS16885	0.46	+0.5
3,652,378	+		RR42_RS16885	0.46	-0.0
3,652,379	-		RR42_RS16885	0.46	-0.5
3,652,379	-		RR42_RS16885	0.46	+1.5
3,652,616	+		RR42_RS16885	0.53	-0.2
3,652,616	+		RR42_RS16885	0.53	+0.5
3,652,616	+		RR42_RS16885	0.53	+0.0
3,652,646	+		RR42_RS16885	0.54	+2.8
3,652,647	-		RR42_RS16885	0.54	-0.6
3,652,738	+		RR42_RS16885	0.57	+0.3
3,652,775	+		RR42_RS16885	0.58	+1.2
3,652,775	+		RR42_RS16885	0.58	-1.1
3,652,775	+		RR42_RS16885	0.58	+0.5
3,652,775	+		RR42_RS16885	0.58	-0.1
3,652,776	-		RR42_RS16885	0.58	+1.5
3,652,776	-		RR42_RS16885	0.58	-2.0
3,652,776	-		RR42_RS16885	0.58	+1.0
3,652,776	-		RR42_RS16885	0.58	-0.5
3,652,794	+		RR42_RS16885	0.59	+0.0
3,652,794	+		RR42_RS16885	0.59	-0.9
3,652,795	-		RR42_RS16885	0.59	-0.7
3,652,795	-		RR42_RS16885	0.59	+1.3
3,652,823	-		RR42_RS16885	0.60	-2.5
3,652,917	-		RR42_RS16885	0.63	+0.1
3,652,949	+		RR42_RS16885	0.64	-0.3
3,652,949	+		RR42_RS16885	0.64	+0.2
3,652,949	+		RR42_RS16885	0.64	+0.5
3,652,950	-		RR42_RS16885	0.64	+0.5
3,652,986	-		RR42_RS16885	0.65	+0.5
3,653,099	+		RR42_RS16885	0.68	+0.3
3,653,099	+		RR42_RS16885	0.68	+0.5
3,653,191	-		RR42_RS16885	0.71	-0.4
3,653,304	-		RR42_RS16885	0.75	+0.2
3,653,304	-		RR42_RS16885	0.75	+2.7
3,653,318	+		RR42_RS16885	0.75	-1.3
3,653,319	-		RR42_RS16885	0.75	+0.2
3,653,319	-		RR42_RS16885	0.75	+0.7
3,653,365	+		RR42_RS16885	0.77	+0.4
3,653,366	-		RR42_RS16885	0.77	+1.0
3,653,487	-		RR42_RS16885	0.81	-1.0
3,653,531	+		RR42_RS16885	0.82	-1.0
3,653,531	+		RR42_RS16885	0.82	-1.8
3,653,532	-		RR42_RS16885	0.82	+0.4
3,653,583	-		RR42_RS16885	0.84	+1.5
3,653,679	-		RR42_RS16885	0.87	+0.3
3,653,679	-		RR42_RS16885	0.87	+0.1
3,653,679	-		RR42_RS16885	0.87	+0.7
3,653,702	+		RR42_RS16885	0.87	-0.3
3,653,702	+		RR42_RS16885	0.87	-2.1
3,653,703	-		RR42_RS16885	0.87	-2.1
3,653,703	-		RR42_RS16885	0.87	-0.3
3,653,703	-		RR42_RS16885	0.87	-1.7
3,653,762	+		RR42_RS16885	0.89	+1.0
3,653,837	-				+0.9
3,653,840	+				-0.1
3,653,840	+				+1.0
3,654,033	+				+1.4
3,654,033	+				-0.2
3,654,083	+				-0.0
3,654,083	+				+1.1
3,654,084	-				+1.0
3,654,084	-				-1.4
3,654,084	-				-2.8
3,654,084	-				-2.9
3,654,216	+				+1.0
3,654,216	+				-0.8
3,654,217	-				-1.0
3,654,217	-				+0.1
3,654,226	+				+0.0
3,654,226	+				-1.1
3,654,227	-				-0.7
3,654,227	-				+0.6
3,654,307	+				+0.9
3,654,308	-				+0.3
3,654,308	-				-2.3
3,654,308	-				-0.9
3,654,317	+				+0.0
3,654,317	+				-0.9
3,654,318	-				-2.1
3,654,626	+		RR42_RS16890	0.26	-2.7
3,654,627	-		RR42_RS16890	0.26	+0.4
3,654,692	-		RR42_RS16890	0.32	-0.6
3,654,778	+		RR42_RS16890	0.39	-1.1
3,654,779	-		RR42_RS16890	0.40	-0.5
3,654,938	+		RR42_RS16890	0.53	-0.4
3,655,085	-		RR42_RS16890	0.66	-0.7