Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS14975
Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source Deoxyribonucleic from herring sperm 5 mg/mL |
---|---|---|---|---|---|
remove | |||||
3,237,023 | - | +2.4 | |||
3,237,026 | - | +0.0 | |||
3,237,026 | - | -1.5 | |||
3,237,026 | - | +0.5 | |||
3,237,071 | - | -2.1 | |||
3,237,071 | - | -0.0 | |||
3,237,071 | - | -0.4 | |||
3,237,071 | - | -0.0 | |||
3,237,377 | + | -2.1 | |||
3,237,377 | + | -2.1 | |||
3,237,377 | + | -3.1 | |||
3,237,378 | - | +0.0 | |||
3,237,378 | - | +0.4 | |||
3,237,383 | + | -2.2 | |||
3,237,383 | + | -1.5 | |||
3,237,384 | - | +2.4 | |||
3,237,384 | - | -0.5 | |||
3,237,437 | + | -3.2 | |||
3,237,437 | + | -3.8 | |||
3,237,469 | + | -0.8 | |||
3,237,469 | + | -2.2 | |||
3,237,470 | - | -2.6 | |||
3,237,470 | - | +1.5 | |||
3,237,470 | - | -1.3 | |||
3,237,497 | + | -2.4 | |||
3,239,357 | - | +0.7 | |||
3,239,440 | - | +0.9 | |||
3,239,446 | - | +0.3 | |||
3,239,446 | - | -0.9 | |||
3,239,453 | - | +0.3 | |||
3,239,513 | + | +0.2 | |||
3,239,551 | + | -0.2 | |||
3,239,660 | - | RR42_RS14980 | 0.21 | +0.9 | |
3,239,751 | + | RR42_RS14980 | 0.41 | +1.8 | |
3,239,751 | + | RR42_RS14980 | 0.41 | -0.6 | |
3,239,751 | + | RR42_RS14980 | 0.41 | +1.0 | |
3,239,752 | - | RR42_RS14980 | 0.41 | +1.6 | |
3,240,022 | + | -0.9 | |||
3,240,152 | - | -1.6 | |||
3,240,152 | - | -0.4 | |||
3,240,191 | - | RR42_RS14985 | 0.21 | -1.0 |
Or see this region's nucleotide sequence