Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07935
Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source Deoxyribonucleic from herring sperm 5 mg/mL |
---|---|---|---|---|---|
remove | |||||
1,704,125 | + | RR42_RS07930 | 0.23 | +0.9 | |
1,704,126 | - | RR42_RS07930 | 0.23 | -0.2 | |
1,704,126 | - | RR42_RS07930 | 0.23 | +0.5 | |
1,704,128 | - | RR42_RS07930 | 0.23 | -0.5 | |
1,704,191 | - | RR42_RS07930 | 0.29 | -0.6 | |
1,704,556 | + | RR42_RS07930 | 0.64 | +0.2 | |
1,704,556 | + | RR42_RS07930 | 0.64 | -2.0 | |
1,704,600 | + | RR42_RS07930 | 0.68 | +1.0 | |
1,704,915 | + | -0.8 | |||
1,704,915 | + | +0.1 | |||
1,704,940 | - | -0.1 | |||
1,704,940 | - | -1.0 | |||
1,705,269 | - | RR42_RS07935 | 0.28 | -2.2 | |
1,705,310 | + | RR42_RS07935 | 0.31 | +0.2 | |
1,705,311 | - | RR42_RS07935 | 0.31 | +0.8 | |
1,705,311 | - | RR42_RS07935 | 0.31 | -1.4 | |
1,705,373 | + | RR42_RS07935 | 0.37 | +1.7 | |
1,705,373 | + | RR42_RS07935 | 0.37 | -1.2 | |
1,705,377 | + | RR42_RS07935 | 0.37 | +0.6 | |
1,705,691 | + | RR42_RS07935 | 0.66 | -1.3 | |
1,705,692 | - | RR42_RS07935 | 0.66 | -0.1 | |
1,706,532 | + | RR42_RS07940 | 0.53 | -1.2 | |
1,706,563 | + | RR42_RS07940 | 0.57 | +0.5 | |
1,706,584 | - | RR42_RS07940 | 0.59 | +0.5 | |
1,706,721 | + | RR42_RS07940 | 0.74 | -2.7 | |
1,706,722 | - | RR42_RS07940 | 0.75 | -0.8 |
Or see this region's nucleotide sequence