Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS07680 and RR42_RS07685 are separated by 32 nucleotides RR42_RS07685 and RR42_RS07690 are separated by 140 nucleotides
RR42_RS07680: RR42_RS07680 - ABC transporter substrate-binding protein, at 1,646,317 to 1,647,324
_RS07680
RR42_RS07685: RR42_RS07685 - amidohydrolase, at 1,647,357 to 1,648,547
_RS07685
RR42_RS07690: RR42_RS07690 - LysR family transcriptional regulator, at 1,648,688 to 1,649,596
_RS07690
Position (kb) 1647
1648
1649 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1646.372 kb on + strand at 1646.373 kb on - strand at 1646.373 kb on - strand at 1646.373 kb on - strand at 1646.497 kb on + strand, within RR42_RS07680 at 1646.599 kb on - strand, within RR42_RS07680 at 1646.813 kb on + strand, within RR42_RS07680 at 1646.813 kb on + strand, within RR42_RS07680 at 1646.814 kb on - strand, within RR42_RS07680 at 1646.814 kb on - strand, within RR42_RS07680 at 1646.840 kb on + strand, within RR42_RS07680 at 1646.840 kb on + strand, within RR42_RS07680 at 1646.978 kb on + strand, within RR42_RS07680 at 1647.119 kb on - strand, within RR42_RS07680 at 1647.119 kb on - strand, within RR42_RS07680 at 1647.172 kb on - strand, within RR42_RS07680 at 1647.172 kb on - strand, within RR42_RS07680 at 1647.290 kb on + strand at 1647.290 kb on + strand at 1647.291 kb on - strand at 1647.431 kb on - strand at 1647.431 kb on - strand at 1647.490 kb on + strand, within RR42_RS07685 at 1647.491 kb on - strand, within RR42_RS07685 at 1647.638 kb on - strand, within RR42_RS07685 at 1647.721 kb on + strand, within RR42_RS07685 at 1647.721 kb on + strand, within RR42_RS07685 at 1647.721 kb on + strand, within RR42_RS07685 at 1647.721 kb on + strand, within RR42_RS07685 at 1647.722 kb on - strand, within RR42_RS07685 at 1647.722 kb on - strand, within RR42_RS07685 at 1647.790 kb on + strand, within RR42_RS07685 at 1647.791 kb on - strand, within RR42_RS07685 at 1647.791 kb on - strand, within RR42_RS07685 at 1648.045 kb on + strand, within RR42_RS07685 at 1648.046 kb on - strand, within RR42_RS07685 at 1648.252 kb on + strand, within RR42_RS07685 at 1648.252 kb on + strand, within RR42_RS07685 at 1648.252 kb on + strand, within RR42_RS07685 at 1648.253 kb on - strand, within RR42_RS07685 at 1648.253 kb on - strand, within RR42_RS07685 at 1648.381 kb on + strand, within RR42_RS07685 at 1648.381 kb on + strand, within RR42_RS07685 at 1648.580 kb on - strand at 1649.174 kb on + strand, within RR42_RS07690
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 1,646,372 + +1.0 1,646,373 - -0.8 1,646,373 - -0.1 1,646,373 - -0.4 1,646,497 + RR42_RS07680 0.18 -1.3 1,646,599 - RR42_RS07680 0.28 -0.6 1,646,813 + RR42_RS07680 0.49 -0.8 1,646,813 + RR42_RS07680 0.49 +2.4 1,646,814 - RR42_RS07680 0.49 -0.1 1,646,814 - RR42_RS07680 0.49 +0.5 1,646,840 + RR42_RS07680 0.52 +1.5 1,646,840 + RR42_RS07680 0.52 +0.4 1,646,978 + RR42_RS07680 0.66 -0.4 1,647,119 - RR42_RS07680 0.80 +0.5 1,647,119 - RR42_RS07680 0.80 -0.7 1,647,172 - RR42_RS07680 0.85 -0.6 1,647,172 - RR42_RS07680 0.85 -0.6 1,647,290 + +0.8 1,647,290 + +0.3 1,647,291 - -0.4 1,647,431 - -4.1 1,647,431 - +0.4 1,647,490 + RR42_RS07685 0.11 +0.4 1,647,491 - RR42_RS07685 0.11 -1.0 1,647,638 - RR42_RS07685 0.24 -0.6 1,647,721 + RR42_RS07685 0.31 -2.6 1,647,721 + RR42_RS07685 0.31 +1.6 1,647,721 + RR42_RS07685 0.31 -2.6 1,647,721 + RR42_RS07685 0.31 +0.7 1,647,722 - RR42_RS07685 0.31 -2.6 1,647,722 - RR42_RS07685 0.31 -0.8 1,647,790 + RR42_RS07685 0.36 -1.1 1,647,791 - RR42_RS07685 0.36 +0.5 1,647,791 - RR42_RS07685 0.36 +0.6 1,648,045 + RR42_RS07685 0.58 +0.2 1,648,046 - RR42_RS07685 0.58 +1.2 1,648,252 + RR42_RS07685 0.75 +0.4 1,648,252 + RR42_RS07685 0.75 -0.6 1,648,252 + RR42_RS07685 0.75 -0.7 1,648,253 - RR42_RS07685 0.75 +0.7 1,648,253 - RR42_RS07685 0.75 -0.6 1,648,381 + RR42_RS07685 0.86 -0.3 1,648,381 + RR42_RS07685 0.86 -0.4 1,648,580 - +0.0 1,649,174 + RR42_RS07690 0.53 +0.7
Or see this region's nucleotide sequence