Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07560

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
1,616,184	+		RR42_RS07555	0.83	-1.3
1,616,185	-		RR42_RS07555	0.83	-1.0
1,616,624	+				+0.2
1,616,624	+				+0.0
1,616,625	-				-1.1
1,616,625	-				+1.1
1,616,625	-				-0.8
1,616,638	+				-0.9
1,616,639	-				+0.7
1,616,809	-				-0.3
1,616,833	+				+0.8
1,616,906	+				-1.6
1,616,906	+				-0.1
1,616,906	+				+0.4
1,616,906	+				-0.9
1,616,907	-				-0.4
1,616,907	-				+0.2
1,616,907	-				-1.9
1,616,907	-				+1.3
1,616,907	-				+1.4
1,616,945	-				-0.4
1,617,068	-				-0.2
1,617,088	+				-0.5
1,617,119	+		RR42_RS07560	0.10	-1.3
1,617,120	-		RR42_RS07560	0.10	+0.6
1,617,312	+		RR42_RS07560	0.23	+0.2
1,617,312	+		RR42_RS07560	0.23	-0.4
1,617,313	-		RR42_RS07560	0.23	-1.5
1,617,313	-		RR42_RS07560	0.23	-3.2
1,617,313	-		RR42_RS07560	0.23	+0.7
1,617,314	+		RR42_RS07560	0.23	+0.6
1,617,315	-		RR42_RS07560	0.23	-0.0
1,617,431	+		RR42_RS07560	0.30	+2.1
1,617,431	+		RR42_RS07560	0.30	-0.0
1,617,432	-		RR42_RS07560	0.30	-0.7
1,617,432	-		RR42_RS07560	0.30	-2.4
1,617,432	-		RR42_RS07560	0.30	+1.4
1,617,434	+		RR42_RS07560	0.30	-2.4
1,617,434	+		RR42_RS07560	0.30	+0.0
1,617,435	-		RR42_RS07560	0.30	-1.6
1,617,435	-		RR42_RS07560	0.30	+0.9
1,617,435	-		RR42_RS07560	0.30	-1.3
1,617,512	+		RR42_RS07560	0.35	-0.6
1,617,512	+		RR42_RS07560	0.35	-0.7
1,617,598	+		RR42_RS07560	0.41	+0.6
1,617,599	-		RR42_RS07560	0.41	-2.3
1,617,728	+		RR42_RS07560	0.49	+3.0
1,617,729	-		RR42_RS07560	0.49	-0.8
1,617,825	-		RR42_RS07560	0.55	-2.4
1,617,849	+		RR42_RS07560	0.57	-0.6
1,617,850	-		RR42_RS07560	0.57	+0.6
1,617,891	-		RR42_RS07560	0.59	+0.7
1,617,979	+		RR42_RS07560	0.65	-0.0
1,617,980	-		RR42_RS07560	0.65	+1.4
1,618,082	+		RR42_RS07560	0.71	+0.3
1,618,089	+		RR42_RS07560	0.72	-0.7
1,618,089	+		RR42_RS07560	0.72	+0.5
1,618,090	-		RR42_RS07560	0.72	-0.6
1,618,225	+		RR42_RS07560	0.80	+0.3
1,618,225	+		RR42_RS07560	0.80	-1.3
1,618,225	+		RR42_RS07560	0.80	-2.0
1,618,225	+		RR42_RS07560	0.80	+0.3
1,618,226	-		RR42_RS07560	0.80	+0.4
1,618,234	+		RR42_RS07560	0.81	-0.1
1,618,235	-		RR42_RS07560	0.81	-2.5
1,618,235	-		RR42_RS07560	0.81	+0.4
1,618,259	+		RR42_RS07560	0.82	-0.1
1,618,259	+		RR42_RS07560	0.82	-0.2
1,618,259	+		RR42_RS07560	0.82	-0.4
1,618,259	+		RR42_RS07560	0.82	-0.5
1,618,259	+		RR42_RS07560	0.82	-0.4
1,618,260	-		RR42_RS07560	0.82	-0.3
1,618,260	-		RR42_RS07560	0.82	-0.1
1,618,260	-		RR42_RS07560	0.82	-0.5
1,618,260	-		RR42_RS07560	0.82	-1.8
1,618,265	+		RR42_RS07560	0.83	+0.7
1,618,266	-		RR42_RS07560	0.83	+1.2
1,618,266	-		RR42_RS07560	0.83	+0.2
1,618,277	+		RR42_RS07560	0.84	+0.5
1,618,277	+		RR42_RS07560	0.84	+1.0
1,618,277	+		RR42_RS07560	0.84	-0.5
1,618,278	-		RR42_RS07560	0.84	+0.4
1,618,278	-		RR42_RS07560	0.84	+1.0
1,618,278	-		RR42_RS07560	0.84	-2.6
1,618,370	+		RR42_RS07560	0.89	+0.0
1,618,371	-		RR42_RS07560	0.89	+0.3
1,618,371	-		RR42_RS07560	0.89	-0.4
1,618,376	+		RR42_RS07560	0.90	+0.9
1,618,376	+		RR42_RS07560	0.90	+1.6
1,618,376	+		RR42_RS07560	0.90	+0.7
1,618,385	+				-1.8
1,618,385	+				-0.8
1,618,385	+				-0.2
1,618,385	+				+0.3
1,618,385	+				+0.1
1,618,386	-				+0.1
1,618,431	-				-1.3
1,618,439	+				+0.4
1,618,439	+				-0.6
1,618,439	+				-0.6
1,618,440	-				-0.6
1,618,440	-				+0.9
1,618,440	-				+0.1
1,618,532	+				+0.0
1,618,532	+				-1.6
1,618,533	-				-0.2
1,618,533	-				-0.6
1,618,646	-				-0.8
1,618,677	+				-1.0
1,618,992	+		RR42_RS07565	0.12	+0.8
1,618,992	+		RR42_RS07565	0.12	+2.0
1,618,993	-		RR42_RS07565	0.13	+0.7
1,618,993	-		RR42_RS07565	0.13	+1.0
1,619,000	-		RR42_RS07565	0.13	-0.7
1,619,473	-		RR42_RS07565	0.33	+0.0