Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07000

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
1,503,585	+				+0.1
1,503,647	+				+0.2
1,503,648	-				+1.1
1,503,665	+		RR42_RS06995	0.11	-1.5
1,503,666	-		RR42_RS06995	0.11	+0.2
1,503,666	-		RR42_RS06995	0.11	-2.3
1,503,678	-		RR42_RS06995	0.13	+1.1
1,503,681	-		RR42_RS06995	0.14	+1.2
1,503,718	+		RR42_RS06995	0.19	+0.5
1,503,718	+		RR42_RS06995	0.19	-2.3
1,503,719	-		RR42_RS06995	0.19	+0.2
1,503,750	+		RR42_RS06995	0.23	-0.7
1,503,751	-		RR42_RS06995	0.23	+0.1
1,503,796	-		RR42_RS06995	0.30	-0.4
1,503,818	+		RR42_RS06995	0.33	+0.0
1,503,875	+		RR42_RS06995	0.41	-0.0
1,503,875	+		RR42_RS06995	0.41	-1.3
1,503,876	-		RR42_RS06995	0.41	+0.3
1,503,943	+		RR42_RS06995	0.50	+1.4
1,503,944	-		RR42_RS06995	0.50	+0.0
1,503,999	-		RR42_RS06995	0.58	-2.0
1,504,025	+		RR42_RS06995	0.62	+0.3
1,504,025	+		RR42_RS06995	0.62	-1.7
1,504,025	+		RR42_RS06995	0.62	-0.8
1,504,026	-		RR42_RS06995	0.62	-0.4
1,504,026	-		RR42_RS06995	0.62	+1.3
1,504,096	+		RR42_RS06995	0.71	-0.9
1,504,097	-		RR42_RS06995	0.72	+0.7
1,504,097	-		RR42_RS06995	0.72	-0.7
1,504,097	-		RR42_RS06995	0.72	-1.5
1,504,097	-		RR42_RS06995	0.72	-0.7
1,504,126	+		RR42_RS06995	0.76	+0.2
1,504,128	+		RR42_RS06995	0.76	+0.6
1,504,128	+		RR42_RS06995	0.76	-1.8
1,504,128	+		RR42_RS06995	0.76	+0.3
1,504,129	-		RR42_RS06995	0.76	-0.7
1,504,134	+		RR42_RS06995	0.77	-2.5
1,504,148	+		RR42_RS06995	0.79	+1.7
1,504,148	+		RR42_RS06995	0.79	+0.2
1,504,148	+		RR42_RS06995	0.79	+0.3
1,504,149	-		RR42_RS06995	0.79	+0.7
1,504,245	-				-0.4
1,504,278	-				+0.2
1,504,278	-				-0.0
1,504,307	+				-0.9
1,504,307	+				-1.3
1,504,308	-				+0.7
1,504,308	-				-1.7
1,504,310	+				+1.0
1,504,311	-				-0.2
1,504,317	+				+0.2
1,504,317	+				+0.2
1,504,443	-				-1.5
1,504,443	-				-0.0
1,504,475	+				-0.1
1,504,476	-				+0.6
1,504,476	-				+0.1
1,504,478	-				-0.7
1,504,490	+				-1.8
1,504,551	+				-0.1
1,504,552	-				-0.9
1,504,552	-				+0.4
1,504,552	-				+0.5
1,504,592	+				-2.9
1,504,592	+				-0.6
1,504,592	+				+0.8
1,504,593	-				-0.8
1,504,593	-				+0.7
1,504,664	+		RR42_RS07000	0.42	+0.2
1,504,681	+		RR42_RS07000	0.50	+0.8
1,504,681	+		RR42_RS07000	0.50	-0.1
1,504,681	+		RR42_RS07000	0.50	-1.0
1,504,681	+		RR42_RS07000	0.50	+0.7
1,504,682	-		RR42_RS07000	0.51	+1.1
1,504,682	-		RR42_RS07000	0.51	-2.4
1,504,682	-		RR42_RS07000	0.51	+0.8
1,504,771	+				+1.3
1,504,771	+				-0.2
1,504,771	+				+2.2
1,504,771	+				+1.0
1,504,772	-				-0.2
1,504,772	-				-3.0
1,504,772	-				+0.2
1,504,782	-				-0.6
1,504,820	+				+0.4
1,504,820	+				-0.0
1,504,820	+				+0.6
1,504,821	-				+1.4
1,504,940	-				-0.1
1,505,074	+				-1.3
1,505,074	+				-0.8
1,505,074	+				-0.2
1,505,074	+				+0.5
1,505,075	-				+1.4
1,505,138	-				-0.3
1,505,208	+		RR42_RS07005	0.20	-0.2
1,505,208	+		RR42_RS07005	0.20	+0.1
1,505,209	-		RR42_RS07005	0.21	-0.4
1,505,209	-		RR42_RS07005	0.21	-1.5
1,505,209	-		RR42_RS07005	0.21	-1.9
1,505,209	-		RR42_RS07005	0.21	+0.2
1,505,304	+		RR42_RS07005	0.35	-0.6
1,505,305	-		RR42_RS07005	0.35	-1.4
1,505,305	-		RR42_RS07005	0.35	-1.6
1,505,413	+		RR42_RS07005	0.52	-0.9
1,505,413	+		RR42_RS07005	0.52	+0.1
1,505,414	-		RR42_RS07005	0.52	-2.9
1,505,414	-		RR42_RS07005	0.52	-0.4
1,505,425	+		RR42_RS07005	0.53	-3.0
1,505,425	+		RR42_RS07005	0.53	-2.4
1,505,425	+		RR42_RS07005	0.53	-1.2
1,505,425	+		RR42_RS07005	0.53	-0.5
1,505,426	-		RR42_RS07005	0.53	-1.8
1,505,426	-		RR42_RS07005	0.53	-2.4
1,505,426	-		RR42_RS07005	0.53	+0.2
1,505,426	-		RR42_RS07005	0.53	+0.8
1,505,633	-		RR42_RS07005	0.85	+0.6
1,505,684	-				+0.1
1,505,719	+				-0.4
1,505,719	+				-0.4
1,505,719	+				-1.8
1,505,719	+				+0.5
1,505,719	+				-1.5
1,505,720	-				-0.4
1,505,720	-				-0.7
1,505,720	-				+0.1
1,505,720	-				+1.5
1,505,720	-				+0.4
1,505,723	+				+1.7
1,505,724	-				+0.2
1,505,724	-				-0.4
1,505,724	-				-1.3
1,505,736	+				-2.5
1,505,752	+				-3.2
1,505,753	-				+0.6
1,505,764	-				+1.6