Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05580
Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source Deoxyribonucleic from herring sperm 5 mg/mL |
---|---|---|---|---|---|
remove | |||||
1,230,143 | + | +1.0 | |||
1,230,369 | + | RR42_RS05580 | 0.73 | -0.2 | |
1,230,631 | - | RR42_RS05585 | 0.20 | -0.3 | |
1,230,671 | - | RR42_RS05585 | 0.27 | +2.3 | |
1,230,742 | + | RR42_RS05585 | 0.38 | +1.0 | |
1,230,871 | + | RR42_RS05585 | 0.59 | +0.9 | |
1,230,921 | + | RR42_RS05585 | 0.67 | -0.1 | |
1,230,922 | - | RR42_RS05585 | 0.67 | +0.4 | |
1,231,115 | + | +0.9 | |||
1,231,126 | + | +0.2 | |||
1,231,126 | + | -0.2 | |||
1,231,236 | - | -1.2 | |||
1,231,236 | - | +0.5 | |||
1,231,236 | - | +2.0 | |||
1,231,279 | + | -0.4 | |||
1,231,280 | - | +1.1 | |||
1,231,280 | - | -3.5 | |||
1,231,334 | + | -0.5 | |||
1,231,334 | + | -0.5 | |||
1,231,334 | + | -1.9 | |||
1,231,335 | - | +1.0 | |||
1,231,335 | - | +0.6 | |||
1,231,335 | - | -1.5 | |||
1,231,335 | - | -2.7 | |||
1,231,336 | + | +0.9 | |||
1,231,336 | + | -0.5 | |||
1,231,336 | + | +0.8 | |||
1,231,337 | - | +1.5 | |||
1,231,337 | - | -0.5 |
Or see this region's nucleotide sequence