Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05565

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05555 and RR42_RS05560 are separated by 16 nucleotidesRR42_RS05560 and RR42_RS05565 are separated by 59 nucleotidesRR42_RS05565 and RR42_RS05570 are separated by 13 nucleotides RR42_RS05555: RR42_RS05555 - NADH:ubiquinone oxidoreductase subunit J, at 1,224,016 to 1,224,666 _RS05555 RR42_RS05560: RR42_RS05560 - NADH-quinone oxidoreductase subunit K, at 1,224,683 to 1,224,988 _RS05560 RR42_RS05565: RR42_RS05565 - NADH:ubiquinone oxidoreductase subunit L, at 1,225,048 to 1,227,147 _RS05565 RR42_RS05570: RR42_RS05570 - NADH:ubiquinone oxidoreductase subunit M, at 1,227,161 to 1,228,627 _RS05570 Position (kb) 1225 1226 1227 1228Strain fitness (log2 ratio) -1 0 1at 1224.999 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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1,224,999 + -0.1

Or see this region's nucleotide sequence