Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05295

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS05290 and RR42_RS05295 are separated by 154 nucleotidesRR42_RS05295 and RR42_RS05300 are separated by 169 nucleotides RR42_RS05290: RR42_RS05290 - ankyrin, at 1,168,087 to 1,168,701 _RS05290 RR42_RS05295: RR42_RS05295 - hypothetical protein, at 1,168,856 to 1,169,866 _RS05295 RR42_RS05300: RR42_RS05300 - TonB-dependent receptor, at 1,170,036 to 1,172,360 _RS05300 Position (kb) 1168 1169 1170Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1167.856 kb on - strandat 1167.856 kb on - strandat 1168.000 kb on + strandat 1168.000 kb on + strandat 1168.005 kb on + strandat 1168.079 kb on + strandat 1168.079 kb on + strandat 1168.079 kb on + strandat 1168.080 kb on - strandat 1168.129 kb on - strandat 1168.447 kb on + strand, within RR42_RS05290at 1168.572 kb on + strand, within RR42_RS05290at 1168.700 kb on - strandat 1168.700 kb on - strandat 1168.700 kb on - strandat 1168.759 kb on + strandat 1168.759 kb on + strandat 1168.760 kb on - strandat 1168.760 kb on - strandat 1168.760 kb on - strandat 1168.868 kb on + strandat 1168.869 kb on - strandat 1168.890 kb on + strandat 1168.891 kb on - strandat 1168.965 kb on + strand, within RR42_RS05295at 1168.966 kb on - strand, within RR42_RS05295at 1168.966 kb on - strand, within RR42_RS05295at 1169.088 kb on - strand, within RR42_RS05295at 1169.250 kb on + strand, within RR42_RS05295at 1169.250 kb on + strand, within RR42_RS05295at 1169.250 kb on + strand, within RR42_RS05295at 1169.251 kb on - strand, within RR42_RS05295at 1169.251 kb on - strand, within RR42_RS05295at 1169.251 kb on - strand, within RR42_RS05295at 1169.532 kb on + strand, within RR42_RS05295at 1169.632 kb on + strand, within RR42_RS05295at 1169.668 kb on - strand, within RR42_RS05295at 1169.728 kb on + strand, within RR42_RS05295at 1169.787 kb on + strandat 1169.787 kb on + strandat 1169.787 kb on + strandat 1169.788 kb on - strandat 1169.788 kb on - strandat 1170.025 kb on + strandat 1170.176 kb on - strandat 1170.217 kb on + strandat 1170.217 kb on + strandat 1170.351 kb on + strand, within RR42_RS05300at 1170.502 kb on + strand, within RR42_RS05300at 1170.517 kb on + strand, within RR42_RS05300at 1170.517 kb on + strand, within RR42_RS05300at 1170.517 kb on + strand, within RR42_RS05300at 1170.517 kb on + strand, within RR42_RS05300at 1170.523 kb on + strand, within RR42_RS05300at 1170.523 kb on + strand, within RR42_RS05300at 1170.738 kb on + strand, within RR42_RS05300at 1170.755 kb on - strand, within RR42_RS05300

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
remove
1,167,856 - -0.4
1,167,856 - -0.8
1,168,000 + +0.7
1,168,000 + +1.0
1,168,005 + -1.5
1,168,079 + +0.5
1,168,079 + +1.1
1,168,079 + +0.3
1,168,080 - -2.2
1,168,129 - +0.5
1,168,447 + RR42_RS05290 0.59 -2.5
1,168,572 + RR42_RS05290 0.79 +1.4
1,168,700 - +1.1
1,168,700 - -0.4
1,168,700 - +1.3
1,168,759 + +0.9
1,168,759 + +2.0
1,168,760 - +3.0
1,168,760 - -0.2
1,168,760 - -1.1
1,168,868 + -0.7
1,168,869 - +0.6
1,168,890 + -2.0
1,168,891 - +1.4
1,168,965 + RR42_RS05295 0.11 +0.3
1,168,966 - RR42_RS05295 0.11 -0.4
1,168,966 - RR42_RS05295 0.11 +0.1
1,169,088 - RR42_RS05295 0.23 +1.1
1,169,250 + RR42_RS05295 0.39 +0.8
1,169,250 + RR42_RS05295 0.39 -1.7
1,169,250 + RR42_RS05295 0.39 -1.4
1,169,251 - RR42_RS05295 0.39 -1.2
1,169,251 - RR42_RS05295 0.39 -0.1
1,169,251 - RR42_RS05295 0.39 +0.9
1,169,532 + RR42_RS05295 0.67 +0.7
1,169,632 + RR42_RS05295 0.77 +1.9
1,169,668 - RR42_RS05295 0.80 -1.1
1,169,728 + RR42_RS05295 0.86 +2.4
1,169,787 + -1.7
1,169,787 + -0.4
1,169,787 + +4.0
1,169,788 - +1.2
1,169,788 - +0.3
1,170,025 + +0.1
1,170,176 - +1.4
1,170,217 + +0.3
1,170,217 + +1.5
1,170,351 + RR42_RS05300 0.14 +0.5
1,170,502 + RR42_RS05300 0.20 +1.0
1,170,517 + RR42_RS05300 0.21 -0.6
1,170,517 + RR42_RS05300 0.21 +1.0
1,170,517 + RR42_RS05300 0.21 +1.4
1,170,517 + RR42_RS05300 0.21 +0.4
1,170,523 + RR42_RS05300 0.21 -2.0
1,170,523 + RR42_RS05300 0.21 -0.2
1,170,738 + RR42_RS05300 0.30 +0.3
1,170,755 - RR42_RS05300 0.31 +0.4

Or see this region's nucleotide sequence