Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04055 and RR42_RS04060 are separated by 593 nucleotides RR42_RS04060 and RR42_RS04065 are separated by 148 nucleotides RR42_RS04065 and RR42_RS04070 overlap by 4 nucleotides
RR42_RS04055: RR42_RS04055 - hypothetical protein, at 898,284 to 898,745
_RS04055
RR42_RS04060: RR42_RS04060 - hypothetical protein, at 899,339 to 899,554
_RS04060
RR42_RS04065: RR42_RS04065 - LysR family transcriptional regulator, at 899,703 to 900,566
_RS04065
RR42_RS04070: RR42_RS04070 - quinone oxidoreductase, at 900,563 to 901,567
_RS04070
Position (kb) 899
900
901 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 898.778 kb on + strand at 898.779 kb on - strand at 898.779 kb on - strand at 898.820 kb on + strand at 898.821 kb on - strand at 898.821 kb on - strand at 898.859 kb on + strand at 898.875 kb on + strand at 899.071 kb on + strand at 899.072 kb on - strand at 899.212 kb on + strand at 899.212 kb on + strand at 899.212 kb on + strand at 899.212 kb on + strand at 899.213 kb on - strand at 899.213 kb on - strand at 899.213 kb on - strand at 899.242 kb on + strand at 899.242 kb on + strand at 899.450 kb on + strand, within RR42_RS04060 at 899.451 kb on - strand, within RR42_RS04060 at 899.457 kb on - strand, within RR42_RS04060 at 899.519 kb on + strand, within RR42_RS04060 at 899.673 kb on + strand at 899.682 kb on + strand at 899.717 kb on + strand at 899.718 kb on - strand at 899.913 kb on - strand, within RR42_RS04065 at 900.179 kb on + strand, within RR42_RS04065 at 900.180 kb on - strand, within RR42_RS04065 at 900.186 kb on + strand, within RR42_RS04065 at 900.187 kb on + strand, within RR42_RS04065 at 900.480 kb on + strand at 900.564 kb on + strand at 900.780 kb on + strand, within RR42_RS04070 at 900.780 kb on + strand, within RR42_RS04070 at 900.780 kb on + strand, within RR42_RS04070 at 900.780 kb on + strand, within RR42_RS04070 at 900.856 kb on - strand, within RR42_RS04070 at 900.856 kb on - strand, within RR42_RS04070 at 900.909 kb on + strand, within RR42_RS04070 at 900.910 kb on - strand, within RR42_RS04070 at 900.939 kb on + strand, within RR42_RS04070 at 900.939 kb on + strand, within RR42_RS04070 at 900.939 kb on + strand, within RR42_RS04070 at 900.939 kb on + strand, within RR42_RS04070 at 900.940 kb on - strand, within RR42_RS04070 at 900.940 kb on - strand, within RR42_RS04070 at 900.940 kb on - strand, within RR42_RS04070 at 900.940 kb on - strand, within RR42_RS04070 at 900.951 kb on + strand, within RR42_RS04070 at 900.952 kb on - strand, within RR42_RS04070 at 900.952 kb on - strand, within RR42_RS04070 at 900.996 kb on + strand, within RR42_RS04070 at 901.172 kb on + strand, within RR42_RS04070 at 901.172 kb on + strand, within RR42_RS04070 at 901.173 kb on - strand, within RR42_RS04070 at 901.173 kb on - strand, within RR42_RS04070 at 901.299 kb on + strand, within RR42_RS04070 at 901.300 kb on - strand, within RR42_RS04070 at 901.300 kb on - strand, within RR42_RS04070 at 901.300 kb on - strand, within RR42_RS04070 at 901.470 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 898,778 + +0.5 898,779 - +1.8 898,779 - -2.4 898,820 + +0.9 898,821 - -0.6 898,821 - +0.9 898,859 + -0.3 898,875 + +0.3 899,071 + +1.0 899,072 - -1.0 899,212 + -0.6 899,212 + +0.7 899,212 + -0.3 899,212 + +0.7 899,213 - -1.9 899,213 - +0.6 899,213 - +0.7 899,242 + +0.8 899,242 + -0.9 899,450 + RR42_RS04060 0.51 +1.7 899,451 - RR42_RS04060 0.52 -3.3 899,457 - RR42_RS04060 0.55 +1.3 899,519 + RR42_RS04060 0.83 -2.0 899,673 + -0.4 899,682 + -1.1 899,717 + +0.1 899,718 - -0.1 899,913 - RR42_RS04065 0.24 +0.4 900,179 + RR42_RS04065 0.55 -1.9 900,180 - RR42_RS04065 0.55 +0.3 900,186 + RR42_RS04065 0.56 +0.3 900,187 + RR42_RS04065 0.56 -0.3 900,480 + -0.4 900,564 + -0.9 900,780 + RR42_RS04070 0.22 +1.4 900,780 + RR42_RS04070 0.22 +0.6 900,780 + RR42_RS04070 0.22 -0.1 900,780 + RR42_RS04070 0.22 +1.3 900,856 - RR42_RS04070 0.29 +0.8 900,856 - RR42_RS04070 0.29 -0.4 900,909 + RR42_RS04070 0.34 -0.4 900,910 - RR42_RS04070 0.35 -0.5 900,939 + RR42_RS04070 0.37 -0.1 900,939 + RR42_RS04070 0.37 +1.0 900,939 + RR42_RS04070 0.37 +0.0 900,939 + RR42_RS04070 0.37 +1.1 900,940 - RR42_RS04070 0.38 +0.1 900,940 - RR42_RS04070 0.38 -0.4 900,940 - RR42_RS04070 0.38 +2.3 900,940 - RR42_RS04070 0.38 +0.4 900,951 + RR42_RS04070 0.39 -0.3 900,952 - RR42_RS04070 0.39 -0.4 900,952 - RR42_RS04070 0.39 -1.1 900,996 + RR42_RS04070 0.43 +2.0 901,172 + RR42_RS04070 0.61 -2.2 901,172 + RR42_RS04070 0.61 +0.3 901,173 - RR42_RS04070 0.61 +1.5 901,173 - RR42_RS04070 0.61 +2.6 901,299 + RR42_RS04070 0.73 -0.9 901,300 - RR42_RS04070 0.73 -1.0 901,300 - RR42_RS04070 0.73 -0.2 901,300 - RR42_RS04070 0.73 -0.8 901,470 - -1.3
Or see this region's nucleotide sequence