Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03920

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03915 and RR42_RS03920 are separated by 55 nucleotidesRR42_RS03920 and RR42_RS03925 are separated by 45 nucleotides RR42_RS03915: RR42_RS03915 - hypothetical protein, at 862,503 to 864,788 _RS03915 RR42_RS03920: RR42_RS03920 - rubredoxin, at 864,844 to 865,020 _RS03920 RR42_RS03925: RR42_RS03925 - hypothetical protein, at 865,066 to 866,229 _RS03925 Position (kb) 864 865 866Strain fitness (log2 ratio) -3 -2 -1 0 1at 863.910 kb on + strand, within RR42_RS03915at 863.911 kb on - strand, within RR42_RS03915at 863.913 kb on + strand, within RR42_RS03915at 864.085 kb on - strand, within RR42_RS03915at 864.085 kb on - strand, within RR42_RS03915at 864.165 kb on + strand, within RR42_RS03915at 864.373 kb on - strand, within RR42_RS03915at 864.373 kb on - strand, within RR42_RS03915at 864.382 kb on - strand, within RR42_RS03915at 864.390 kb on + strand, within RR42_RS03915at 864.391 kb on - strand, within RR42_RS03915at 864.391 kb on - strand, within RR42_RS03915at 864.519 kb on + strand, within RR42_RS03915at 864.786 kb on + strandat 864.787 kb on - strandat 864.813 kb on + strandat 864.813 kb on + strandat 864.813 kb on + strandat 864.813 kb on + strandat 864.814 kb on - strandat 864.814 kb on - strandat 864.814 kb on - strandat 864.875 kb on + strand, within RR42_RS03920at 864.876 kb on - strand, within RR42_RS03920at 864.876 kb on - strand, within RR42_RS03920at 865.204 kb on + strand, within RR42_RS03925at 865.676 kb on + strand, within RR42_RS03925at 865.939 kb on + strand, within RR42_RS03925

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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863,910 + RR42_RS03915 0.62 +0.2
863,911 - RR42_RS03915 0.62 +0.8
863,913 + RR42_RS03915 0.62 +0.3
864,085 - RR42_RS03915 0.69 -1.5
864,085 - RR42_RS03915 0.69 -0.0
864,165 + RR42_RS03915 0.73 +0.1
864,373 - RR42_RS03915 0.82 -2.9
864,373 - RR42_RS03915 0.82 -0.4
864,382 - RR42_RS03915 0.82 +0.5
864,390 + RR42_RS03915 0.83 -0.9
864,391 - RR42_RS03915 0.83 -0.4
864,391 - RR42_RS03915 0.83 -0.7
864,519 + RR42_RS03915 0.88 +0.8
864,786 + -1.3
864,787 - -1.4
864,813 + -0.7
864,813 + +0.3
864,813 + +0.5
864,813 + -0.5
864,814 - +0.6
864,814 - -0.5
864,814 - -0.1
864,875 + RR42_RS03920 0.18 -0.4
864,876 - RR42_RS03920 0.18 +0.2
864,876 - RR42_RS03920 0.18 -0.9
865,204 + RR42_RS03925 0.12 -1.9
865,676 + RR42_RS03925 0.52 +0.6
865,939 + RR42_RS03925 0.75 +1.5

Or see this region's nucleotide sequence