Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03865

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03860 and RR42_RS03865 are separated by 93 nucleotidesRR42_RS03865 and RR42_RS03870 are separated by 112 nucleotidesRR42_RS03870 and RR42_RS03875 are separated by 166 nucleotides RR42_RS03860: RR42_RS03860 - transcriptional regulator, at 852,840 to 853,919 _RS03860 RR42_RS03865: RR42_RS03865 - hydroxyacid dehydrogenase, at 854,013 to 854,954 _RS03865 RR42_RS03870: RR42_RS03870 - hypothetical protein, at 855,067 to 855,261 _RS03870 RR42_RS03875: RR42_RS03875 - nucleoside 2-deoxyribosyltransferase, at 855,428 to 855,976 _RS03875 Position (kb) 854 855Strain fitness (log2 ratio) -2 -1 0 1 2at 853.068 kb on + strand, within RR42_RS03860at 853.069 kb on - strand, within RR42_RS03860at 853.069 kb on - strand, within RR42_RS03860at 853.076 kb on + strand, within RR42_RS03860at 853.203 kb on + strand, within RR42_RS03860at 853.769 kb on + strand, within RR42_RS03860at 853.769 kb on + strand, within RR42_RS03860at 853.770 kb on - strand, within RR42_RS03860at 853.770 kb on - strand, within RR42_RS03860at 853.770 kb on - strand, within RR42_RS03860at 853.774 kb on - strand, within RR42_RS03860at 853.963 kb on + strandat 854.031 kb on - strandat 854.083 kb on - strandat 854.245 kb on - strand, within RR42_RS03865at 854.245 kb on - strand, within RR42_RS03865at 854.651 kb on - strand, within RR42_RS03865at 854.836 kb on + strand, within RR42_RS03865at 854.836 kb on + strand, within RR42_RS03865at 854.837 kb on - strand, within RR42_RS03865at 854.990 kb on + strandat 854.993 kb on - strandat 855.080 kb on - strandat 855.080 kb on - strandat 855.081 kb on + strandat 855.440 kb on + strandat 855.440 kb on + strandat 855.440 kb on + strandat 855.515 kb on + strand, within RR42_RS03875at 855.516 kb on - strand, within RR42_RS03875

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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853,068 + RR42_RS03860 0.21 +0.0
853,069 - RR42_RS03860 0.21 -0.1
853,069 - RR42_RS03860 0.21 +0.2
853,076 + RR42_RS03860 0.22 -0.9
853,203 + RR42_RS03860 0.34 -0.8
853,769 + RR42_RS03860 0.86 -0.3
853,769 + RR42_RS03860 0.86 -1.4
853,770 - RR42_RS03860 0.86 +0.2
853,770 - RR42_RS03860 0.86 -1.0
853,770 - RR42_RS03860 0.86 +2.1
853,774 - RR42_RS03860 0.86 -0.1
853,963 + +0.3
854,031 - +0.4
854,083 - -1.0
854,245 - RR42_RS03865 0.25 -1.4
854,245 - RR42_RS03865 0.25 -1.2
854,651 - RR42_RS03865 0.68 -0.7
854,836 + RR42_RS03865 0.87 -1.6
854,836 + RR42_RS03865 0.87 +0.9
854,837 - RR42_RS03865 0.87 +0.0
854,990 + +0.3
854,993 - -0.7
855,080 - -0.0
855,080 - +0.0
855,081 + -2.6
855,440 + -1.5
855,440 + +0.3
855,440 + -0.7
855,515 + RR42_RS03875 0.16 +0.6
855,516 - RR42_RS03875 0.16 +0.3

Or see this region's nucleotide sequence