Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03400 and RR42_RS03405 overlap by 8 nucleotides RR42_RS03405 and RR42_RS03410 are separated by 16 nucleotides RR42_RS03410 and RR42_RS03415 overlap by 7 nucleotides
RR42_RS03400: RR42_RS03400 - permease, at 756,703 to 757,596
_RS03400
RR42_RS03405: RR42_RS03405 - epoxyqueuosine reductase, at 757,589 to 758,809
_RS03405
RR42_RS03410: RR42_RS03410 - ATPase, at 758,826 to 759,338
_RS03410
RR42_RS03415: RR42_RS03415 - N-acetylmuramoyl-L-alanine amidase, at 759,332 to 760,837
_RS03415
Position (kb) 757
758
759 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 756.611 kb on + strand at 756.612 kb on - strand at 756.612 kb on - strand at 756.653 kb on - strand at 756.688 kb on - strand at 756.688 kb on - strand at 756.688 kb on - strand at 756.691 kb on + strand at 756.818 kb on - strand, within RR42_RS03400 at 756.940 kb on + strand, within RR42_RS03400 at 756.941 kb on - strand, within RR42_RS03400 at 757.018 kb on + strand, within RR42_RS03400 at 757.018 kb on + strand, within RR42_RS03400 at 757.019 kb on - strand, within RR42_RS03400 at 757.019 kb on - strand, within RR42_RS03400 at 757.019 kb on - strand, within RR42_RS03400 at 757.483 kb on + strand, within RR42_RS03400 at 757.483 kb on + strand, within RR42_RS03400 at 757.484 kb on - strand, within RR42_RS03400 at 757.484 kb on - strand, within RR42_RS03400 at 757.484 kb on - strand, within RR42_RS03400 at 757.484 kb on - strand, within RR42_RS03400 at 757.485 kb on + strand, within RR42_RS03400 at 757.486 kb on - strand, within RR42_RS03400 at 757.486 kb on - strand, within RR42_RS03400 at 757.625 kb on - strand at 757.947 kb on + strand, within RR42_RS03405 at 757.947 kb on + strand, within RR42_RS03405 at 757.947 kb on + strand, within RR42_RS03405 at 757.948 kb on - strand, within RR42_RS03405 at 758.013 kb on + strand, within RR42_RS03405 at 758.349 kb on + strand, within RR42_RS03405 at 758.452 kb on - strand, within RR42_RS03405 at 758.533 kb on + strand, within RR42_RS03405 at 758.535 kb on + strand, within RR42_RS03405 at 758.535 kb on + strand, within RR42_RS03405 at 758.535 kb on + strand, within RR42_RS03405 at 758.535 kb on + strand, within RR42_RS03405 at 758.535 kb on + strand, within RR42_RS03405 at 758.820 kb on + strand at 758.820 kb on + strand at 758.820 kb on + strand at 759.506 kb on + strand, within RR42_RS03415 at 759.506 kb on + strand, within RR42_RS03415 at 759.507 kb on - strand, within RR42_RS03415 at 759.656 kb on + strand, within RR42_RS03415 at 759.656 kb on + strand, within RR42_RS03415 at 759.657 kb on - strand, within RR42_RS03415 at 759.657 kb on - strand, within RR42_RS03415 at 759.745 kb on + strand, within RR42_RS03415 at 759.746 kb on - strand, within RR42_RS03415 at 759.794 kb on + strand, within RR42_RS03415
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 756,611 + +1.6 756,612 - -0.5 756,612 - +0.3 756,653 - +0.7 756,688 - -0.1 756,688 - -1.8 756,688 - -0.3 756,691 + +2.0 756,818 - RR42_RS03400 0.13 -0.3 756,940 + RR42_RS03400 0.27 +1.9 756,941 - RR42_RS03400 0.27 +0.3 757,018 + RR42_RS03400 0.35 -2.6 757,018 + RR42_RS03400 0.35 -2.0 757,019 - RR42_RS03400 0.35 -3.0 757,019 - RR42_RS03400 0.35 +0.5 757,019 - RR42_RS03400 0.35 -1.9 757,483 + RR42_RS03400 0.87 -0.1 757,483 + RR42_RS03400 0.87 +0.3 757,484 - RR42_RS03400 0.87 -1.4 757,484 - RR42_RS03400 0.87 -0.0 757,484 - RR42_RS03400 0.87 -0.8 757,484 - RR42_RS03400 0.87 -0.0 757,485 + RR42_RS03400 0.87 +0.0 757,486 - RR42_RS03400 0.88 -3.3 757,486 - RR42_RS03400 0.88 -0.4 757,625 - -0.3 757,947 + RR42_RS03405 0.29 -0.8 757,947 + RR42_RS03405 0.29 -2.4 757,947 + RR42_RS03405 0.29 -2.1 757,948 - RR42_RS03405 0.29 +0.4 758,013 + RR42_RS03405 0.35 -0.1 758,349 + RR42_RS03405 0.62 -0.1 758,452 - RR42_RS03405 0.71 +0.1 758,533 + RR42_RS03405 0.77 +1.1 758,535 + RR42_RS03405 0.77 +0.6 758,535 + RR42_RS03405 0.77 +1.5 758,535 + RR42_RS03405 0.77 -2.1 758,535 + RR42_RS03405 0.77 +0.3 758,535 + RR42_RS03405 0.77 +0.9 758,820 + -0.8 758,820 + +0.0 758,820 + +0.6 759,506 + RR42_RS03415 0.12 +1.5 759,506 + RR42_RS03415 0.12 +3.9 759,507 - RR42_RS03415 0.12 -1.3 759,656 + RR42_RS03415 0.22 +2.0 759,656 + RR42_RS03415 0.22 +1.5 759,657 - RR42_RS03415 0.22 +2.3 759,657 - RR42_RS03415 0.22 +1.2 759,745 + RR42_RS03415 0.27 -1.0 759,746 - RR42_RS03415 0.27 +1.7 759,794 + RR42_RS03415 0.31 +2.1
Or see this region's nucleotide sequence