Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03175

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03175 and RR42_RS03180 are separated by 217 nucleotides RR42_RS03175: RR42_RS03175 - DNA helicase, at 701,519 to 704,407 _RS03175 RR42_RS03180: RR42_RS03180 - ABC transporter substrate-binding protein, at 704,625 to 705,665 _RS03180 Position (kb) 701 702 703 704 705Strain fitness (log2 ratio) -2 -1 0 1 2at 700.805 kb on + strandat 700.806 kb on - strandat 700.806 kb on - strandat 700.814 kb on + strandat 701.062 kb on + strandat 701.122 kb on + strandat 701.123 kb on - strandat 701.777 kb on + strandat 701.777 kb on + strandat 701.777 kb on + strandat 701.789 kb on + strandat 701.790 kb on - strandat 701.925 kb on - strand, within RR42_RS03175at 702.465 kb on - strand, within RR42_RS03175at 702.608 kb on - strand, within RR42_RS03175at 702.743 kb on + strand, within RR42_RS03175at 702.743 kb on + strand, within RR42_RS03175at 702.743 kb on + strand, within RR42_RS03175at 702.743 kb on + strand, within RR42_RS03175at 702.743 kb on + strand, within RR42_RS03175at 702.743 kb on + strand, within RR42_RS03175at 702.743 kb on + strand, within RR42_RS03175at 702.743 kb on + strand, within RR42_RS03175at 702.744 kb on - strand, within RR42_RS03175at 702.744 kb on - strand, within RR42_RS03175at 702.744 kb on - strand, within RR42_RS03175at 702.744 kb on - strand, within RR42_RS03175at 702.744 kb on - strand, within RR42_RS03175at 702.744 kb on - strand, within RR42_RS03175at 702.744 kb on - strand, within RR42_RS03175at 702.744 kb on - strand, within RR42_RS03175at 703.196 kb on + strand, within RR42_RS03175at 703.197 kb on - strand, within RR42_RS03175at 703.262 kb on + strand, within RR42_RS03175at 703.263 kb on - strand, within RR42_RS03175at 703.676 kb on + strand, within RR42_RS03175at 703.943 kb on - strand, within RR42_RS03175at 704.009 kb on + strand, within RR42_RS03175at 704.010 kb on - strand, within RR42_RS03175at 704.119 kb on + strandat 704.138 kb on + strandat 704.138 kb on + strandat 704.139 kb on - strandat 704.139 kb on - strandat 704.139 kb on - strandat 704.405 kb on + strandat 704.405 kb on + strandat 704.406 kb on - strandat 704.489 kb on - strandat 704.489 kb on - strandat 704.490 kb on + strandat 704.490 kb on + strandat 704.491 kb on - strandat 704.491 kb on - strandat 704.503 kb on + strandat 704.503 kb on + strandat 704.504 kb on - strandat 704.530 kb on - strandat 704.530 kb on - strandat 704.530 kb on - strandat 704.548 kb on + strandat 704.548 kb on + strandat 704.549 kb on - strandat 704.549 kb on - strandat 704.801 kb on + strand, within RR42_RS03180at 704.880 kb on + strand, within RR42_RS03180at 704.880 kb on + strand, within RR42_RS03180at 704.880 kb on + strand, within RR42_RS03180at 704.880 kb on + strand, within RR42_RS03180at 704.881 kb on - strand, within RR42_RS03180at 704.881 kb on - strand, within RR42_RS03180at 704.881 kb on - strand, within RR42_RS03180at 704.881 kb on - strand, within RR42_RS03180at 705.000 kb on + strand, within RR42_RS03180at 705.000 kb on + strand, within RR42_RS03180at 705.150 kb on + strand, within RR42_RS03180at 705.151 kb on - strand, within RR42_RS03180at 705.151 kb on - strand, within RR42_RS03180at 705.156 kb on + strand, within RR42_RS03180at 705.156 kb on + strand, within RR42_RS03180at 705.157 kb on - strand, within RR42_RS03180at 705.157 kb on - strand, within RR42_RS03180at 705.157 kb on - strand, within RR42_RS03180at 705.157 kb on - strand, within RR42_RS03180at 705.227 kb on + strand, within RR42_RS03180at 705.227 kb on + strand, within RR42_RS03180at 705.227 kb on + strand, within RR42_RS03180at 705.227 kb on + strand, within RR42_RS03180at 705.243 kb on + strand, within RR42_RS03180at 705.243 kb on + strand, within RR42_RS03180at 705.243 kb on + strand, within RR42_RS03180at 705.330 kb on + strand, within RR42_RS03180at 705.331 kb on - strand, within RR42_RS03180

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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700,805 + -2.7
700,806 - +0.8
700,806 - -0.9
700,814 + -0.5
701,062 + +0.8
701,122 + -0.6
701,123 - +0.1
701,777 + -0.8
701,777 + -0.2
701,777 + -1.0
701,789 + -1.0
701,790 - +0.9
701,925 - RR42_RS03175 0.14 -0.4
702,465 - RR42_RS03175 0.33 -0.3
702,608 - RR42_RS03175 0.38 -0.0
702,743 + RR42_RS03175 0.42 +0.2
702,743 + RR42_RS03175 0.42 -0.5
702,743 + RR42_RS03175 0.42 -0.6
702,743 + RR42_RS03175 0.42 +0.5
702,743 + RR42_RS03175 0.42 +0.0
702,743 + RR42_RS03175 0.42 +0.1
702,743 + RR42_RS03175 0.42 +0.0
702,743 + RR42_RS03175 0.42 -1.2
702,744 - RR42_RS03175 0.42 +0.2
702,744 - RR42_RS03175 0.42 -1.2
702,744 - RR42_RS03175 0.42 -0.5
702,744 - RR42_RS03175 0.42 -0.6
702,744 - RR42_RS03175 0.42 -0.7
702,744 - RR42_RS03175 0.42 -0.2
702,744 - RR42_RS03175 0.42 -1.3
702,744 - RR42_RS03175 0.42 +0.5
703,196 + RR42_RS03175 0.58 -2.6
703,197 - RR42_RS03175 0.58 -0.2
703,262 + RR42_RS03175 0.60 -0.3
703,263 - RR42_RS03175 0.60 -1.7
703,676 + RR42_RS03175 0.75 +0.7
703,943 - RR42_RS03175 0.84 -1.0
704,009 + RR42_RS03175 0.86 +0.3
704,010 - RR42_RS03175 0.86 +2.0
704,119 + -0.3
704,138 + -0.8
704,138 + +1.0
704,139 - +0.7
704,139 - -0.1
704,139 - +0.1
704,405 + -0.5
704,405 + -0.5
704,406 - +1.8
704,489 - +1.2
704,489 - +0.5
704,490 + -1.7
704,490 + -2.0
704,491 - -0.4
704,491 - -0.1
704,503 + +0.0
704,503 + -0.4
704,504 - +1.3
704,530 - -2.7
704,530 - -2.4
704,530 - -1.0
704,548 + -0.1
704,548 + +1.1
704,549 - +0.1
704,549 - +1.0
704,801 + RR42_RS03180 0.17 +0.1
704,880 + RR42_RS03180 0.24 +0.2
704,880 + RR42_RS03180 0.24 -1.2
704,880 + RR42_RS03180 0.24 +0.1
704,880 + RR42_RS03180 0.24 -1.0
704,881 - RR42_RS03180 0.25 +0.9
704,881 - RR42_RS03180 0.25 -0.6
704,881 - RR42_RS03180 0.25 -1.1
704,881 - RR42_RS03180 0.25 -0.1
705,000 + RR42_RS03180 0.36 +0.0
705,000 + RR42_RS03180 0.36 -1.1
705,150 + RR42_RS03180 0.50 +0.5
705,151 - RR42_RS03180 0.51 +0.9
705,151 - RR42_RS03180 0.51 +0.6
705,156 + RR42_RS03180 0.51 -0.5
705,156 + RR42_RS03180 0.51 -0.1
705,157 - RR42_RS03180 0.51 -0.6
705,157 - RR42_RS03180 0.51 -0.4
705,157 - RR42_RS03180 0.51 +0.1
705,157 - RR42_RS03180 0.51 +0.5
705,227 + RR42_RS03180 0.58 -0.5
705,227 + RR42_RS03180 0.58 +0.3
705,227 + RR42_RS03180 0.58 +0.2
705,227 + RR42_RS03180 0.58 +0.6
705,243 + RR42_RS03180 0.59 +1.3
705,243 + RR42_RS03180 0.59 -0.7
705,243 + RR42_RS03180 0.59 +0.7
705,330 + RR42_RS03180 0.68 -0.2
705,331 - RR42_RS03180 0.68 +0.2

Or see this region's nucleotide sequence