Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02980 and RR42_RS02985 are separated by 119 nucleotides RR42_RS02985 and RR42_RS02990 overlap by 8 nucleotides RR42_RS02990 and RR42_RS02995 are separated by 828 nucleotides
RR42_RS02980: RR42_RS02980 - hypothetical protein, at 661,410 to 661,859
_RS02980
RR42_RS02985: RR42_RS02985 - hypothetical protein, at 661,979 to 662,566
_RS02985
RR42_RS02990: RR42_RS02990 - hypothetical protein, at 662,559 to 662,762
_RS02990
RR42_RS02995: RR42_RS02995 - LysR family transcriptional regulator, at 663,591 to 664,505
_RS02995
Position (kb) 662
663 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 661.576 kb on - strand, within RR42_RS02980 at 661.624 kb on - strand, within RR42_RS02980 at 661.624 kb on - strand, within RR42_RS02980 at 661.679 kb on - strand, within RR42_RS02980 at 661.708 kb on + strand, within RR42_RS02980 at 661.708 kb on + strand, within RR42_RS02980 at 661.709 kb on - strand, within RR42_RS02980 at 661.709 kb on - strand, within RR42_RS02980 at 661.709 kb on - strand, within RR42_RS02980 at 661.950 kb on - strand at 661.953 kb on + strand at 661.954 kb on - strand at 662.028 kb on + strand at 662.029 kb on - strand at 662.128 kb on + strand, within RR42_RS02985 at 662.129 kb on - strand, within RR42_RS02985 at 662.169 kb on + strand, within RR42_RS02985 at 662.387 kb on + strand, within RR42_RS02985 at 662.394 kb on - strand, within RR42_RS02985 at 662.423 kb on + strand, within RR42_RS02985 at 662.423 kb on + strand, within RR42_RS02985 at 662.424 kb on - strand, within RR42_RS02985 at 662.492 kb on - strand, within RR42_RS02985 at 662.502 kb on - strand, within RR42_RS02985 at 662.560 kb on + strand at 662.568 kb on + strand at 662.568 kb on + strand at 662.568 kb on + strand at 662.569 kb on - strand at 662.569 kb on - strand at 662.569 kb on - strand at 662.617 kb on + strand, within RR42_RS02990 at 662.617 kb on + strand, within RR42_RS02990 at 662.617 kb on + strand, within RR42_RS02990 at 662.618 kb on - strand, within RR42_RS02990 at 662.621 kb on + strand, within RR42_RS02990 at 662.622 kb on - strand, within RR42_RS02990 at 662.684 kb on + strand, within RR42_RS02990 at 662.710 kb on + strand, within RR42_RS02990 at 662.916 kb on + strand at 662.917 kb on - strand at 663.045 kb on + strand at 663.066 kb on + strand at 663.067 kb on - strand at 663.067 kb on - strand at 663.067 kb on - strand at 663.067 kb on - strand at 663.067 kb on - strand at 663.067 kb on - strand at 663.130 kb on + strand at 663.130 kb on + strand at 663.131 kb on - strand at 663.223 kb on + strand at 663.223 kb on + strand at 663.224 kb on - strand at 663.224 kb on - strand at 663.255 kb on + strand at 663.263 kb on + strand at 663.358 kb on - strand at 663.358 kb on - strand at 663.430 kb on + strand at 663.431 kb on - strand at 663.431 kb on - strand at 663.437 kb on + strand at 663.593 kb on - strand at 663.701 kb on - strand, within RR42_RS02995
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 661,576 - RR42_RS02980 0.37 +0.2 661,624 - RR42_RS02980 0.48 +0.7 661,624 - RR42_RS02980 0.48 -0.2 661,679 - RR42_RS02980 0.60 +1.9 661,708 + RR42_RS02980 0.66 -0.3 661,708 + RR42_RS02980 0.66 -0.1 661,709 - RR42_RS02980 0.66 +1.0 661,709 - RR42_RS02980 0.66 +0.0 661,709 - RR42_RS02980 0.66 -0.4 661,950 - +1.3 661,953 + +0.6 661,954 - -0.1 662,028 + +0.3 662,029 - +0.5 662,128 + RR42_RS02985 0.25 -1.7 662,129 - RR42_RS02985 0.26 -1.5 662,169 + RR42_RS02985 0.32 +0.1 662,387 + RR42_RS02985 0.69 +0.4 662,394 - RR42_RS02985 0.71 -0.8 662,423 + RR42_RS02985 0.76 -3.5 662,423 + RR42_RS02985 0.76 -1.0 662,424 - RR42_RS02985 0.76 -1.1 662,492 - RR42_RS02985 0.87 +1.0 662,502 - RR42_RS02985 0.89 +1.9 662,560 + +1.5 662,568 + +0.7 662,568 + -0.9 662,568 + -0.9 662,569 - -0.1 662,569 - -0.6 662,569 - -0.3 662,617 + RR42_RS02990 0.28 -0.7 662,617 + RR42_RS02990 0.28 +0.2 662,617 + RR42_RS02990 0.28 -0.4 662,618 - RR42_RS02990 0.29 +0.7 662,621 + RR42_RS02990 0.30 +0.2 662,622 - RR42_RS02990 0.31 -2.4 662,684 + RR42_RS02990 0.61 -2.0 662,710 + RR42_RS02990 0.74 -0.0 662,916 + +0.6 662,917 - -0.9 663,045 + -0.4 663,066 + -1.3 663,067 - +0.6 663,067 - +0.1 663,067 - -0.1 663,067 - -0.5 663,067 - +0.7 663,067 - -0.5 663,130 + +0.7 663,130 + +0.7 663,131 - +0.1 663,223 + +0.1 663,223 + +0.6 663,224 - +0.5 663,224 - -2.5 663,255 + +1.0 663,263 + -1.0 663,358 - +2.6 663,358 - +0.1 663,430 + -0.8 663,431 - -1.5 663,431 - +1.2 663,437 + -2.1 663,593 - +0.0 663,701 - RR42_RS02995 0.12 +1.2
Or see this region's nucleotide sequence