Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02540
Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Carbon source Deoxyribonucleic from herring sperm 5 mg/mL |
---|---|---|---|---|---|
remove | |||||
571,346 | + | RR42_RS02535 | 0.66 | +0.6 | |
571,346 | + | RR42_RS02535 | 0.66 | -2.2 | |
571,346 | + | RR42_RS02535 | 0.66 | -0.3 | |
571,469 | + | RR42_RS02535 | 0.73 | +0.4 | |
571,469 | + | RR42_RS02535 | 0.73 | +1.0 | |
571,469 | + | RR42_RS02535 | 0.73 | +0.7 | |
571,473 | - | RR42_RS02535 | 0.73 | -0.9 | |
571,473 | - | RR42_RS02535 | 0.73 | +0.8 | |
571,574 | + | RR42_RS02535 | 0.78 | -1.0 | |
572,079 | + | -1.0 | |||
572,079 | + | +0.2 | |||
572,080 | - | +0.7 | |||
572,080 | - | -1.8 | |||
572,089 | - | -1.5 | |||
572,157 | - | -2.1 | |||
572,157 | - | +1.3 | |||
572,157 | - | -0.2 | |||
572,181 | - | -1.3 | |||
572,434 | + | RR42_RS02540 | 0.15 | +0.9 | |
572,435 | - | RR42_RS02540 | 0.15 | +0.8 | |
572,609 | - | RR42_RS02540 | 0.32 | -1.7 | |
572,917 | + | RR42_RS02540 | 0.62 | -0.3 | |
573,268 | + | +0.0 | |||
573,269 | - | +0.7 | |||
573,269 | - | -2.5 | |||
573,733 | - | RR42_RS02545 | 0.50 | -2.3 | |
573,733 | - | RR42_RS02545 | 0.50 | -1.5 | |
573,792 | + | RR42_RS02545 | 0.57 | +0.4 | |
573,793 | - | RR42_RS02545 | 0.57 | -1.3 | |
574,101 | - | -3.3 | |||
574,101 | - | -1.1 |
Or see this region's nucleotide sequence