Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01895 and RR42_RS01900 are separated by 175 nucleotides RR42_RS01900 and RR42_RS01905 are separated by 78 nucleotides RR42_RS01905 and RR42_RS01910 are separated by 109 nucleotides RR42_RS01910 and RR42_RS01915 are separated by 7 nucleotides
RR42_RS01895: RR42_RS01895 - MFS transporter, at 426,763 to 427,623
_RS01895
RR42_RS01900: RR42_RS01900 - membrane protein, at 427,799 to 428,008
_RS01900
RR42_RS01905: RR42_RS01905 - cytochrome C oxidase subunit II, at 428,087 to 428,848
_RS01905
RR42_RS01910: RR42_RS01910 - cytochrome C oxidase subunit I, at 428,958 to 429,614
_RS01910
RR42_RS01915: RR42_RS01915 - cytochrome C oxidase subunit I, at 429,622 to 430,725
_RS01915
Position (kb) 428
429 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 427.154 kb on + strand, within RR42_RS01895 at 427.299 kb on + strand, within RR42_RS01895 at 427.366 kb on + strand, within RR42_RS01895 at 427.366 kb on + strand, within RR42_RS01895 at 427.420 kb on + strand, within RR42_RS01895 at 427.421 kb on - strand, within RR42_RS01895 at 427.423 kb on - strand, within RR42_RS01895 at 427.564 kb on + strand at 427.601 kb on - strand at 427.621 kb on + strand at 427.622 kb on - strand at 427.622 kb on - strand at 427.723 kb on + strand at 427.724 kb on - strand at 427.724 kb on - strand at 427.724 kb on - strand at 427.724 kb on - strand at 427.724 kb on - strand at 427.830 kb on - strand, within RR42_RS01900 at 427.830 kb on - strand, within RR42_RS01900 at 427.830 kb on - strand, within RR42_RS01900 at 427.966 kb on + strand, within RR42_RS01900 at 427.966 kb on + strand, within RR42_RS01900 at 428.036 kb on - strand at 428.041 kb on + strand at 428.041 kb on + strand at 428.042 kb on - strand at 428.042 kb on - strand at 428.338 kb on + strand, within RR42_RS01905 at 428.339 kb on - strand, within RR42_RS01905 at 428.498 kb on - strand, within RR42_RS01905 at 428.640 kb on - strand, within RR42_RS01905 at 428.640 kb on - strand, within RR42_RS01905 at 428.753 kb on + strand, within RR42_RS01905 at 428.754 kb on - strand, within RR42_RS01905 at 428.760 kb on - strand, within RR42_RS01905 at 428.957 kb on + strand at 428.957 kb on + strand at 428.957 kb on + strand at 428.957 kb on + strand at 428.958 kb on - strand at 428.958 kb on - strand at 428.958 kb on - strand at 428.958 kb on - strand at 429.096 kb on + strand, within RR42_RS01910 at 429.105 kb on + strand, within RR42_RS01910 at 429.105 kb on + strand, within RR42_RS01910 at 429.105 kb on + strand, within RR42_RS01910 at 429.106 kb on - strand, within RR42_RS01910 at 429.108 kb on + strand, within RR42_RS01910 at 429.108 kb on + strand, within RR42_RS01910 at 429.108 kb on + strand, within RR42_RS01910 at 429.109 kb on - strand, within RR42_RS01910 at 429.109 kb on - strand, within RR42_RS01910 at 429.109 kb on - strand, within RR42_RS01910 at 429.141 kb on + strand, within RR42_RS01910 at 429.141 kb on + strand, within RR42_RS01910 at 429.142 kb on - strand, within RR42_RS01910 at 429.142 kb on - strand, within RR42_RS01910 at 429.154 kb on - strand, within RR42_RS01910 at 429.403 kb on - strand, within RR42_RS01910 at 429.597 kb on + strand at 429.598 kb on - strand at 429.676 kb on + strand at 429.677 kb on - strand at 429.677 kb on - strand at 429.677 kb on - strand at 429.677 kb on - strand at 429.677 kb on - strand at 429.677 kb on - strand at 429.818 kb on - strand, within RR42_RS01915
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 427,154 + RR42_RS01895 0.45 +1.0 427,299 + RR42_RS01895 0.62 +0.9 427,366 + RR42_RS01895 0.70 +2.4 427,366 + RR42_RS01895 0.70 +2.2 427,420 + RR42_RS01895 0.76 +2.4 427,421 - RR42_RS01895 0.76 +2.4 427,423 - RR42_RS01895 0.77 +1.6 427,564 + +0.8 427,601 - +0.4 427,621 + -1.2 427,622 - +0.3 427,622 - +0.5 427,723 + +0.3 427,724 - +0.5 427,724 - +1.0 427,724 - +1.7 427,724 - +0.7 427,724 - +1.0 427,830 - RR42_RS01900 0.15 -3.3 427,830 - RR42_RS01900 0.15 -0.1 427,830 - RR42_RS01900 0.15 -2.2 427,966 + RR42_RS01900 0.80 +0.9 427,966 + RR42_RS01900 0.80 +1.4 428,036 - +0.5 428,041 + -0.6 428,041 + -0.3 428,042 - +1.3 428,042 - +0.9 428,338 + RR42_RS01905 0.33 +2.9 428,339 - RR42_RS01905 0.33 +2.9 428,498 - RR42_RS01905 0.54 +0.2 428,640 - RR42_RS01905 0.73 +0.6 428,640 - RR42_RS01905 0.73 -1.2 428,753 + RR42_RS01905 0.87 +0.6 428,754 - RR42_RS01905 0.88 +2.5 428,760 - RR42_RS01905 0.88 +3.5 428,957 + +1.5 428,957 + -0.7 428,957 + +1.1 428,957 + -3.2 428,958 - +1.8 428,958 - +1.7 428,958 - +1.0 428,958 - +1.9 429,096 + RR42_RS01910 0.21 +2.3 429,105 + RR42_RS01910 0.22 +2.0 429,105 + RR42_RS01910 0.22 +2.5 429,105 + RR42_RS01910 0.22 +1.0 429,106 - RR42_RS01910 0.23 +1.1 429,108 + RR42_RS01910 0.23 +0.4 429,108 + RR42_RS01910 0.23 +3.3 429,108 + RR42_RS01910 0.23 +2.2 429,109 - RR42_RS01910 0.23 +1.8 429,109 - RR42_RS01910 0.23 +1.6 429,109 - RR42_RS01910 0.23 +1.8 429,141 + RR42_RS01910 0.28 +2.7 429,141 + RR42_RS01910 0.28 +1.7 429,142 - RR42_RS01910 0.28 +1.1 429,142 - RR42_RS01910 0.28 +1.9 429,154 - RR42_RS01910 0.30 +1.1 429,403 - RR42_RS01910 0.68 +0.7 429,597 + -1.0 429,598 - +2.2 429,676 + -0.4 429,677 - +1.8 429,677 - +0.4 429,677 - +0.8 429,677 - +1.7 429,677 - +2.0 429,677 - +0.6 429,818 - RR42_RS01915 0.18 +1.5
Or see this region's nucleotide sequence