Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01545

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS01540 and RR42_RS01545 are separated by 136 nucleotidesRR42_RS01545 and RR42_RS01550 are separated by 113 nucleotides RR42_RS01540: RR42_RS01540 - alpha/beta hydrolase, at 346,565 to 347,455 _RS01540 RR42_RS01545: RR42_RS01545 - TetR family transcriptional regulator, at 347,592 to 348,245 _RS01545 RR42_RS01550: RR42_RS01550 - ABC transporter substrate-binding protein, at 348,359 to 349,345 _RS01550 Position (kb) 347 348 349Strain fitness (log2 ratio) -2 -1 0 1at 346.691 kb on - strand, within RR42_RS01540at 346.691 kb on - strand, within RR42_RS01540at 346.691 kb on - strand, within RR42_RS01540at 346.793 kb on + strand, within RR42_RS01540at 346.793 kb on + strand, within RR42_RS01540at 346.793 kb on + strand, within RR42_RS01540at 346.794 kb on - strand, within RR42_RS01540at 346.948 kb on + strand, within RR42_RS01540at 346.970 kb on + strand, within RR42_RS01540at 346.970 kb on + strand, within RR42_RS01540at 346.970 kb on + strand, within RR42_RS01540at 347.004 kb on - strand, within RR42_RS01540at 347.006 kb on + strand, within RR42_RS01540at 347.006 kb on + strand, within RR42_RS01540at 347.007 kb on - strand, within RR42_RS01540at 347.007 kb on - strand, within RR42_RS01540at 347.007 kb on - strand, within RR42_RS01540at 347.075 kb on + strand, within RR42_RS01540at 347.076 kb on - strand, within RR42_RS01540at 347.145 kb on - strand, within RR42_RS01540at 347.381 kb on + strandat 347.382 kb on - strandat 347.453 kb on + strandat 347.471 kb on + strandat 347.471 kb on + strandat 347.472 kb on - strandat 347.478 kb on - strandat 347.484 kb on - strandat 347.495 kb on + strandat 347.542 kb on + strandat 347.543 kb on - strandat 347.636 kb on + strandat 347.781 kb on + strand, within RR42_RS01545at 347.784 kb on + strand, within RR42_RS01545at 347.784 kb on + strand, within RR42_RS01545at 347.784 kb on + strand, within RR42_RS01545at 347.785 kb on - strand, within RR42_RS01545at 347.785 kb on - strand, within RR42_RS01545at 347.917 kb on - strand, within RR42_RS01545at 347.931 kb on + strand, within RR42_RS01545at 347.931 kb on + strand, within RR42_RS01545at 347.932 kb on - strand, within RR42_RS01545at 347.964 kb on + strand, within RR42_RS01545at 347.964 kb on + strand, within RR42_RS01545at 348.020 kb on - strand, within RR42_RS01545at 348.184 kb on - strandat 348.251 kb on - strandat 348.396 kb on + strandat 348.397 kb on - strandat 348.397 kb on - strandat 348.614 kb on + strand, within RR42_RS01550at 348.614 kb on + strand, within RR42_RS01550at 348.614 kb on + strand, within RR42_RS01550at 348.614 kb on + strand, within RR42_RS01550at 348.615 kb on - strand, within RR42_RS01550at 348.615 kb on - strand, within RR42_RS01550at 348.615 kb on - strand, within RR42_RS01550at 348.615 kb on - strand, within RR42_RS01550at 348.641 kb on + strand, within RR42_RS01550at 348.707 kb on + strand, within RR42_RS01550at 348.708 kb on - strand, within RR42_RS01550at 348.708 kb on - strand, within RR42_RS01550at 348.708 kb on - strand, within RR42_RS01550at 348.765 kb on + strand, within RR42_RS01550at 349.013 kb on + strand, within RR42_RS01550at 349.013 kb on + strand, within RR42_RS01550at 349.014 kb on - strand, within RR42_RS01550at 349.130 kb on + strand, within RR42_RS01550

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
remove
346,691 - RR42_RS01540 0.14 -0.2
346,691 - RR42_RS01540 0.14 +1.1
346,691 - RR42_RS01540 0.14 -0.2
346,793 + RR42_RS01540 0.26 -0.1
346,793 + RR42_RS01540 0.26 -1.5
346,793 + RR42_RS01540 0.26 +0.4
346,794 - RR42_RS01540 0.26 +1.5
346,948 + RR42_RS01540 0.43 +1.4
346,970 + RR42_RS01540 0.45 +0.3
346,970 + RR42_RS01540 0.45 -1.6
346,970 + RR42_RS01540 0.45 -0.0
347,004 - RR42_RS01540 0.49 +0.9
347,006 + RR42_RS01540 0.49 -1.6
347,006 + RR42_RS01540 0.49 -0.1
347,007 - RR42_RS01540 0.50 -1.5
347,007 - RR42_RS01540 0.50 -0.2
347,007 - RR42_RS01540 0.50 -0.8
347,075 + RR42_RS01540 0.57 -0.3
347,076 - RR42_RS01540 0.57 +0.2
347,145 - RR42_RS01540 0.65 +1.4
347,381 + +0.2
347,382 - +1.7
347,453 + -1.6
347,471 + +0.3
347,471 + -0.7
347,472 - +1.4
347,478 - +1.0
347,484 - +0.4
347,495 + -1.1
347,542 + +1.3
347,543 - +1.4
347,636 + +0.8
347,781 + RR42_RS01545 0.29 -2.5
347,784 + RR42_RS01545 0.29 -0.6
347,784 + RR42_RS01545 0.29 +0.2
347,784 + RR42_RS01545 0.29 -2.2
347,785 - RR42_RS01545 0.30 -1.2
347,785 - RR42_RS01545 0.30 -0.6
347,917 - RR42_RS01545 0.50 -0.6
347,931 + RR42_RS01545 0.52 -0.8
347,931 + RR42_RS01545 0.52 -0.8
347,932 - RR42_RS01545 0.52 +1.4
347,964 + RR42_RS01545 0.57 -0.6
347,964 + RR42_RS01545 0.57 -2.1
348,020 - RR42_RS01545 0.65 -0.9
348,184 - -1.2
348,251 - -0.1
348,396 + -0.2
348,397 - -1.0
348,397 - -1.9
348,614 + RR42_RS01550 0.26 +1.4
348,614 + RR42_RS01550 0.26 -0.5
348,614 + RR42_RS01550 0.26 +0.6
348,614 + RR42_RS01550 0.26 -0.7
348,615 - RR42_RS01550 0.26 -1.5
348,615 - RR42_RS01550 0.26 -0.3
348,615 - RR42_RS01550 0.26 -0.6
348,615 - RR42_RS01550 0.26 -1.0
348,641 + RR42_RS01550 0.29 +0.4
348,707 + RR42_RS01550 0.35 -0.5
348,708 - RR42_RS01550 0.35 +0.6
348,708 - RR42_RS01550 0.35 -2.1
348,708 - RR42_RS01550 0.35 +1.4
348,765 + RR42_RS01550 0.41 -0.2
349,013 + RR42_RS01550 0.66 -1.2
349,013 + RR42_RS01550 0.66 -1.3
349,014 - RR42_RS01550 0.66 +0.9
349,130 + RR42_RS01550 0.78 -0.2

Or see this region's nucleotide sequence