Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01520

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01515 and RR42_RS01520 are separated by 195 nucleotidesRR42_RS01520 and RR42_RS01525 are separated by 157 nucleotides RR42_RS01515: RR42_RS01515 - cytidyltransferase, at 341,106 to 342,152 _RS01515 RR42_RS01520: RR42_RS01520 - LysR family transcriptional regulator, at 342,348 to 343,268 _RS01520 RR42_RS01525: RR42_RS01525 - LacI family transcriptional regulator, at 343,426 to 344,427 _RS01525 Position (kb) 342 343 344Strain fitness (log2 ratio) -3 -2 -1 0 1at 341.458 kb on - strand, within RR42_RS01515at 341.652 kb on + strand, within RR42_RS01515at 342.186 kb on + strandat 342.279 kb on + strandat 342.280 kb on - strandat 342.359 kb on + strandat 342.361 kb on + strandat 342.362 kb on - strandat 342.362 kb on - strandat 342.362 kb on - strandat 342.362 kb on - strandat 342.558 kb on + strand, within RR42_RS01520at 342.558 kb on + strand, within RR42_RS01520at 342.559 kb on - strand, within RR42_RS01520at 342.631 kb on - strand, within RR42_RS01520at 342.673 kb on + strand, within RR42_RS01520at 342.673 kb on + strand, within RR42_RS01520at 342.673 kb on + strand, within RR42_RS01520at 342.674 kb on - strand, within RR42_RS01520at 342.757 kb on + strand, within RR42_RS01520at 342.758 kb on - strand, within RR42_RS01520at 342.774 kb on + strand, within RR42_RS01520at 342.774 kb on + strand, within RR42_RS01520at 342.775 kb on - strand, within RR42_RS01520at 342.775 kb on - strand, within RR42_RS01520at 342.775 kb on - strand, within RR42_RS01520at 342.775 kb on - strand, within RR42_RS01520at 343.075 kb on + strand, within RR42_RS01520at 343.076 kb on - strand, within RR42_RS01520at 344.005 kb on + strand, within RR42_RS01525at 344.005 kb on + strand, within RR42_RS01525at 344.005 kb on + strand, within RR42_RS01525at 344.005 kb on + strand, within RR42_RS01525at 344.005 kb on + strand, within RR42_RS01525at 344.005 kb on + strand, within RR42_RS01525at 344.006 kb on - strand, within RR42_RS01525at 344.006 kb on - strand, within RR42_RS01525at 344.006 kb on - strand, within RR42_RS01525at 344.006 kb on - strand, within RR42_RS01525at 344.006 kb on - strand, within RR42_RS01525at 344.006 kb on - strand, within RR42_RS01525at 344.006 kb on - strand, within RR42_RS01525at 344.191 kb on + strand, within RR42_RS01525

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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341,458 - RR42_RS01515 0.34 -0.0
341,652 + RR42_RS01515 0.52 -0.5
342,186 + -1.7
342,279 + -0.6
342,280 - -2.3
342,359 + -1.4
342,361 + +0.3
342,362 - +0.3
342,362 - +0.6
342,362 - +0.6
342,362 - -0.5
342,558 + RR42_RS01520 0.23 +0.5
342,558 + RR42_RS01520 0.23 -0.6
342,559 - RR42_RS01520 0.23 -0.2
342,631 - RR42_RS01520 0.31 -1.6
342,673 + RR42_RS01520 0.35 +0.0
342,673 + RR42_RS01520 0.35 -0.1
342,673 + RR42_RS01520 0.35 -2.6
342,674 - RR42_RS01520 0.35 +0.8
342,757 + RR42_RS01520 0.44 +0.7
342,758 - RR42_RS01520 0.45 +0.4
342,774 + RR42_RS01520 0.46 -0.8
342,774 + RR42_RS01520 0.46 +0.0
342,775 - RR42_RS01520 0.46 -0.8
342,775 - RR42_RS01520 0.46 +0.5
342,775 - RR42_RS01520 0.46 -0.1
342,775 - RR42_RS01520 0.46 +0.8
343,075 + RR42_RS01520 0.79 -0.1
343,076 - RR42_RS01520 0.79 -3.0
344,005 + RR42_RS01525 0.58 -0.2
344,005 + RR42_RS01525 0.58 +0.4
344,005 + RR42_RS01525 0.58 +0.8
344,005 + RR42_RS01525 0.58 -0.3
344,005 + RR42_RS01525 0.58 +0.2
344,005 + RR42_RS01525 0.58 +0.7
344,006 - RR42_RS01525 0.58 -1.9
344,006 - RR42_RS01525 0.58 +1.4
344,006 - RR42_RS01525 0.58 +1.0
344,006 - RR42_RS01525 0.58 -1.8
344,006 - RR42_RS01525 0.58 +1.1
344,006 - RR42_RS01525 0.58 +0.4
344,006 - RR42_RS01525 0.58 +1.3
344,191 + RR42_RS01525 0.76 +1.4

Or see this region's nucleotide sequence