Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS01125 and RR42_RS01130 are separated by 55 nucleotides RR42_RS01130 and RR42_RS01135 overlap by 4 nucleotides RR42_RS01135 and RR42_RS01140 are separated by 50 nucleotides RR42_RS01140 and RR42_RS01145 are separated by 16 nucleotides
RR42_RS01125: RR42_RS01125 - acetylglutamate kinase, at 259,367 to 260,284
_RS01125
RR42_RS01130: RR42_RS01130 - haloacid dehalogenase, at 260,340 to 261,320
_RS01130
RR42_RS01135: RR42_RS01135 - dihydroorotate oxidase, at 261,317 to 261,976
_RS01135
RR42_RS01140: RR42_RS01140 - hypothetical protein, at 262,027 to 262,260
_RS01140
RR42_RS01145: RR42_RS01145 - membrane protein, at 262,277 to 263,710
_RS01145
Position (kb) 260
261
262 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 260.282 kb on + strand at 260.293 kb on + strand at 260.294 kb on - strand at 260.294 kb on - strand at 260.349 kb on - strand at 260.349 kb on - strand at 260.349 kb on - strand at 260.505 kb on + strand, within RR42_RS01130 at 260.505 kb on + strand, within RR42_RS01130 at 260.506 kb on - strand, within RR42_RS01130 at 260.614 kb on + strand, within RR42_RS01130 at 260.615 kb on - strand, within RR42_RS01130 at 260.751 kb on + strand, within RR42_RS01130 at 260.986 kb on - strand, within RR42_RS01130 at 260.986 kb on - strand, within RR42_RS01130 at 261.265 kb on + strand at 261.265 kb on + strand at 261.265 kb on + strand at 261.272 kb on - strand at 261.974 kb on + strand at 261.975 kb on - strand at 262.028 kb on + strand at 262.250 kb on + strand at 262.250 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 260,282 + -0.9 260,293 + -0.1 260,294 - -0.3 260,294 - +0.9 260,349 - +0.0 260,349 - -1.3 260,349 - -2.2 260,505 + RR42_RS01130 0.17 +3.5 260,505 + RR42_RS01130 0.17 -0.4 260,506 - RR42_RS01130 0.17 +0.1 260,614 + RR42_RS01130 0.28 -0.2 260,615 - RR42_RS01130 0.28 -0.4 260,751 + RR42_RS01130 0.42 +3.5 260,986 - RR42_RS01130 0.66 -1.7 260,986 - RR42_RS01130 0.66 -0.5 261,265 + -1.6 261,265 + +0.3 261,265 + -1.0 261,272 - +1.2 261,974 + -0.4 261,975 - +1.0 262,028 + +0.0 262,250 + +0.2 262,250 + -0.2
Or see this region's nucleotide sequence