Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01085

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01075 and RR42_RS01080 are separated by 259 nucleotidesRR42_RS01080 and RR42_RS01085 are separated by 23 nucleotidesRR42_RS01085 and RR42_RS01090 overlap by 4 nucleotides RR42_RS01075: RR42_RS01075 - hypothetical protein, at 252,492 to 253,073 _RS01075 RR42_RS01080: RR42_RS01080 - hypothetical protein, at 253,333 to 253,629 _RS01080 RR42_RS01085: RR42_RS01085 - chemotaxis protein CheY, at 253,653 to 254,276 _RS01085 RR42_RS01090: RR42_RS01090 - histidine kinase, at 254,273 to 255,676 _RS01090 Position (kb) 253 254 255Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 252.795 kb on + strand, within RR42_RS01075at 252.796 kb on - strand, within RR42_RS01075at 252.853 kb on + strand, within RR42_RS01075at 252.853 kb on + strand, within RR42_RS01075at 252.854 kb on - strand, within RR42_RS01075at 252.985 kb on - strand, within RR42_RS01075at 252.985 kb on - strand, within RR42_RS01075at 252.985 kb on - strand, within RR42_RS01075at 253.034 kb on + strandat 253.034 kb on + strandat 253.034 kb on + strandat 253.035 kb on - strandat 253.035 kb on - strandat 253.062 kb on + strandat 253.071 kb on + strandat 253.071 kb on + strandat 253.071 kb on + strandat 253.071 kb on + strandat 253.071 kb on + strandat 253.072 kb on - strandat 253.072 kb on - strandat 253.158 kb on + strandat 253.159 kb on - strandat 253.172 kb on - strandat 253.205 kb on + strandat 253.205 kb on + strandat 253.206 kb on - strandat 253.206 kb on - strandat 253.206 kb on - strandat 253.216 kb on - strandat 253.346 kb on + strandat 253.346 kb on + strandat 253.346 kb on + strandat 253.346 kb on + strandat 253.347 kb on - strandat 253.347 kb on - strandat 253.347 kb on - strandat 253.425 kb on - strand, within RR42_RS01080at 253.609 kb on + strandat 253.609 kb on + strandat 253.610 kb on - strandat 253.610 kb on - strandat 253.610 kb on - strandat 253.610 kb on - strandat 253.610 kb on - strandat 253.637 kb on + strandat 253.638 kb on - strandat 253.654 kb on + strandat 253.655 kb on - strandat 253.706 kb on + strandat 253.706 kb on + strandat 253.706 kb on + strandat 253.706 kb on + strandat 253.707 kb on - strandat 253.707 kb on - strandat 253.707 kb on - strandat 253.707 kb on - strandat 253.707 kb on - strandat 253.707 kb on - strandat 253.733 kb on + strand, within RR42_RS01085at 253.733 kb on + strand, within RR42_RS01085at 253.733 kb on + strand, within RR42_RS01085at 253.733 kb on + strand, within RR42_RS01085at 253.734 kb on - strand, within RR42_RS01085at 253.894 kb on + strand, within RR42_RS01085at 253.895 kb on - strand, within RR42_RS01085at 253.895 kb on - strand, within RR42_RS01085at 253.945 kb on + strand, within RR42_RS01085at 253.945 kb on + strand, within RR42_RS01085at 254.077 kb on + strand, within RR42_RS01085at 254.077 kb on + strand, within RR42_RS01085at 254.078 kb on - strand, within RR42_RS01085at 254.433 kb on + strand, within RR42_RS01090at 254.434 kb on - strand, within RR42_RS01090at 254.754 kb on + strand, within RR42_RS01090at 254.754 kb on + strand, within RR42_RS01090at 254.754 kb on + strand, within RR42_RS01090at 254.755 kb on - strand, within RR42_RS01090at 254.755 kb on - strand, within RR42_RS01090at 254.827 kb on - strand, within RR42_RS01090at 254.874 kb on + strand, within RR42_RS01090at 254.875 kb on - strand, within RR42_RS01090at 254.875 kb on - strand, within RR42_RS01090at 255.150 kb on + strand, within RR42_RS01090at 255.150 kb on + strand, within RR42_RS01090at 255.151 kb on - strand, within RR42_RS01090at 255.151 kb on - strand, within RR42_RS01090at 255.192 kb on + strand, within RR42_RS01090at 255.192 kb on + strand, within RR42_RS01090at 255.193 kb on - strand, within RR42_RS01090at 255.193 kb on - strand, within RR42_RS01090at 255.213 kb on + strand, within RR42_RS01090at 255.213 kb on + strand, within RR42_RS01090at 255.213 kb on + strand, within RR42_RS01090at 255.213 kb on + strand, within RR42_RS01090at 255.214 kb on - strand, within RR42_RS01090at 255.229 kb on - strand, within RR42_RS01090

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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252,795 + RR42_RS01075 0.52 +1.4
252,796 - RR42_RS01075 0.52 -3.0
252,853 + RR42_RS01075 0.62 -0.2
252,853 + RR42_RS01075 0.62 +1.4
252,854 - RR42_RS01075 0.62 -2.0
252,985 - RR42_RS01075 0.85 -0.3
252,985 - RR42_RS01075 0.85 -0.9
252,985 - RR42_RS01075 0.85 +0.3
253,034 + +0.8
253,034 + +0.3
253,034 + +0.7
253,035 - +0.6
253,035 - -1.6
253,062 + -0.6
253,071 + -0.4
253,071 + -1.0
253,071 + -0.2
253,071 + +0.5
253,071 + +1.6
253,072 - -0.2
253,072 - +0.5
253,158 + -2.3
253,159 - +0.9
253,172 - -0.2
253,205 + -0.4
253,205 + +0.8
253,206 - -0.1
253,206 - +1.7
253,206 - -0.1
253,216 - +0.3
253,346 + -0.2
253,346 + +0.6
253,346 + -0.3
253,346 + -3.4
253,347 - -1.9
253,347 - -0.4
253,347 - +0.7
253,425 - RR42_RS01080 0.31 -0.6
253,609 + +0.1
253,609 + +0.0
253,610 - +1.5
253,610 - +0.6
253,610 - +0.9
253,610 - -0.9
253,610 - -0.0
253,637 + +0.2
253,638 - -0.4
253,654 + -1.0
253,655 - -0.6
253,706 + +1.6
253,706 + +1.6
253,706 + +0.2
253,706 + +1.3
253,707 - -1.2
253,707 - -1.0
253,707 - -1.4
253,707 - -0.4
253,707 - +0.3
253,707 - -0.2
253,733 + RR42_RS01085 0.13 +0.4
253,733 + RR42_RS01085 0.13 +1.2
253,733 + RR42_RS01085 0.13 +0.4
253,733 + RR42_RS01085 0.13 +2.2
253,734 - RR42_RS01085 0.13 +1.1
253,894 + RR42_RS01085 0.39 -1.0
253,895 - RR42_RS01085 0.39 +0.1
253,895 - RR42_RS01085 0.39 +0.7
253,945 + RR42_RS01085 0.47 -0.9
253,945 + RR42_RS01085 0.47 +0.6
254,077 + RR42_RS01085 0.68 -0.4
254,077 + RR42_RS01085 0.68 -1.5
254,078 - RR42_RS01085 0.68 +1.7
254,433 + RR42_RS01090 0.11 +1.4
254,434 - RR42_RS01090 0.11 -1.0
254,754 + RR42_RS01090 0.34 +1.4
254,754 + RR42_RS01090 0.34 -0.6
254,754 + RR42_RS01090 0.34 +1.1
254,755 - RR42_RS01090 0.34 -0.8
254,755 - RR42_RS01090 0.34 +0.4
254,827 - RR42_RS01090 0.39 -2.0
254,874 + RR42_RS01090 0.43 +0.8
254,875 - RR42_RS01090 0.43 -0.8
254,875 - RR42_RS01090 0.43 -2.0
255,150 + RR42_RS01090 0.62 +0.8
255,150 + RR42_RS01090 0.62 +1.6
255,151 - RR42_RS01090 0.63 +1.3
255,151 - RR42_RS01090 0.63 -0.2
255,192 + RR42_RS01090 0.65 +0.3
255,192 + RR42_RS01090 0.65 +0.0
255,193 - RR42_RS01090 0.66 -0.9
255,193 - RR42_RS01090 0.66 +0.3
255,213 + RR42_RS01090 0.67 +0.6
255,213 + RR42_RS01090 0.67 +2.5
255,213 + RR42_RS01090 0.67 -0.8
255,213 + RR42_RS01090 0.67 -2.7
255,214 - RR42_RS01090 0.67 +0.0
255,229 - RR42_RS01090 0.68 -0.9

Or see this region's nucleotide sequence