Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS01050

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS01040 and RR42_RS01045 are separated by 101 nucleotidesRR42_RS01045 and RR42_RS01050 are separated by 147 nucleotidesRR42_RS01050 and RR42_RS01055 are separated by 328 nucleotides RR42_RS01040: RR42_RS01040 - cobalamin biosynthesis protein CobW, at 245,329 to 246,417 _RS01040 RR42_RS01045: RR42_RS01045 - Fur family transcriptional regulator, at 246,519 to 247,040 _RS01045 RR42_RS01050: RR42_RS01050 - alpha/beta hydrolase, at 247,188 to 248,087 _RS01050 RR42_RS01055: RR42_RS01055 - ABC transporter substrate-binding protein, at 248,416 to 249,402 _RS01055 Position (kb) 247 248 249Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 246.310 kb on + strandat 246.311 kb on - strandat 246.345 kb on + strandat 246.346 kb on - strandat 246.346 kb on - strandat 246.464 kb on + strandat 246.520 kb on + strandat 246.521 kb on - strandat 246.811 kb on + strand, within RR42_RS01045at 246.812 kb on - strand, within RR42_RS01045at 247.050 kb on + strandat 247.050 kb on + strandat 247.051 kb on - strandat 247.051 kb on - strandat 247.056 kb on + strandat 247.057 kb on - strandat 247.147 kb on + strandat 247.147 kb on + strandat 247.147 kb on + strandat 247.147 kb on + strandat 247.148 kb on - strandat 247.148 kb on - strandat 247.188 kb on - strandat 247.188 kb on - strandat 247.244 kb on + strandat 247.245 kb on - strandat 247.440 kb on + strand, within RR42_RS01050at 247.440 kb on + strand, within RR42_RS01050at 247.440 kb on + strand, within RR42_RS01050at 247.440 kb on + strand, within RR42_RS01050at 247.440 kb on + strand, within RR42_RS01050at 247.440 kb on + strand, within RR42_RS01050at 247.440 kb on + strand, within RR42_RS01050at 247.441 kb on - strand, within RR42_RS01050at 247.441 kb on - strand, within RR42_RS01050at 247.441 kb on - strand, within RR42_RS01050at 247.511 kb on - strand, within RR42_RS01050at 247.617 kb on + strand, within RR42_RS01050at 247.617 kb on + strand, within RR42_RS01050at 247.617 kb on + strand, within RR42_RS01050at 247.617 kb on + strand, within RR42_RS01050at 247.618 kb on - strand, within RR42_RS01050at 247.618 kb on - strand, within RR42_RS01050at 247.618 kb on - strand, within RR42_RS01050at 247.618 kb on - strand, within RR42_RS01050at 247.618 kb on - strand, within RR42_RS01050at 247.618 kb on - strand, within RR42_RS01050at 247.722 kb on + strand, within RR42_RS01050at 247.722 kb on + strand, within RR42_RS01050at 247.722 kb on + strand, within RR42_RS01050at 247.722 kb on + strand, within RR42_RS01050at 247.723 kb on - strand, within RR42_RS01050at 247.723 kb on - strand, within RR42_RS01050at 247.791 kb on + strand, within RR42_RS01050at 247.792 kb on - strand, within RR42_RS01050at 247.792 kb on - strand, within RR42_RS01050at 247.842 kb on + strand, within RR42_RS01050at 247.843 kb on - strand, within RR42_RS01050at 248.028 kb on + strandat 248.028 kb on + strandat 248.028 kb on + strandat 248.028 kb on + strandat 248.029 kb on - strandat 248.029 kb on - strandat 248.029 kb on - strandat 248.029 kb on - strandat 248.165 kb on - strandat 248.214 kb on - strandat 248.236 kb on + strandat 248.237 kb on - strandat 248.237 kb on - strandat 248.237 kb on - strandat 248.237 kb on - strandat 248.237 kb on - strandat 248.237 kb on - strandat 248.278 kb on + strandat 248.278 kb on + strandat 248.393 kb on + strandat 248.393 kb on + strandat 248.393 kb on + strandat 248.393 kb on + strandat 248.393 kb on + strandat 248.393 kb on + strandat 248.393 kb on + strandat 248.393 kb on + strandat 248.394 kb on - strandat 248.394 kb on - strandat 248.394 kb on - strandat 248.412 kb on + strandat 248.683 kb on + strand, within RR42_RS01055at 248.683 kb on + strand, within RR42_RS01055at 248.683 kb on + strand, within RR42_RS01055at 248.704 kb on - strand, within RR42_RS01055at 248.704 kb on - strand, within RR42_RS01055at 248.854 kb on + strand, within RR42_RS01055at 248.854 kb on + strand, within RR42_RS01055at 248.854 kb on + strand, within RR42_RS01055at 248.854 kb on + strand, within RR42_RS01055at 248.855 kb on - strand, within RR42_RS01055at 248.855 kb on - strand, within RR42_RS01055at 248.855 kb on - strand, within RR42_RS01055at 248.856 kb on + strand, within RR42_RS01055at 248.857 kb on - strand, within RR42_RS01055at 248.857 kb on - strand, within RR42_RS01055at 248.971 kb on + strand, within RR42_RS01055at 248.972 kb on - strand, within RR42_RS01055at 248.972 kb on - strand, within RR42_RS01055at 249.082 kb on + strand, within RR42_RS01055at 249.082 kb on + strand, within RR42_RS01055at 249.082 kb on + strand, within RR42_RS01055at 249.082 kb on + strand, within RR42_RS01055

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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246,310 + +2.1
246,311 - +0.5
246,345 + +0.3
246,346 - +2.2
246,346 - -0.0
246,464 + -1.0
246,520 + +0.4
246,521 - -0.1
246,811 + RR42_RS01045 0.56 +0.2
246,812 - RR42_RS01045 0.56 +2.1
247,050 + +0.8
247,050 + -2.0
247,051 - +0.9
247,051 - -1.2
247,056 + +0.1
247,057 - +0.5
247,147 + +0.1
247,147 + -0.3
247,147 + +0.3
247,147 + +0.6
247,148 - +0.6
247,148 - -1.2
247,188 - -0.9
247,188 - -0.6
247,244 + -1.4
247,245 - +1.4
247,440 + RR42_RS01050 0.28 -0.7
247,440 + RR42_RS01050 0.28 -3.2
247,440 + RR42_RS01050 0.28 +0.4
247,440 + RR42_RS01050 0.28 +0.2
247,440 + RR42_RS01050 0.28 +1.6
247,440 + RR42_RS01050 0.28 -1.3
247,440 + RR42_RS01050 0.28 +0.4
247,441 - RR42_RS01050 0.28 -0.8
247,441 - RR42_RS01050 0.28 +0.4
247,441 - RR42_RS01050 0.28 -1.4
247,511 - RR42_RS01050 0.36 +3.0
247,617 + RR42_RS01050 0.48 -1.2
247,617 + RR42_RS01050 0.48 -1.9
247,617 + RR42_RS01050 0.48 +0.3
247,617 + RR42_RS01050 0.48 -1.1
247,618 - RR42_RS01050 0.48 +0.1
247,618 - RR42_RS01050 0.48 +0.6
247,618 - RR42_RS01050 0.48 +0.2
247,618 - RR42_RS01050 0.48 -0.7
247,618 - RR42_RS01050 0.48 -0.0
247,618 - RR42_RS01050 0.48 +0.5
247,722 + RR42_RS01050 0.59 +1.1
247,722 + RR42_RS01050 0.59 +0.1
247,722 + RR42_RS01050 0.59 -2.4
247,722 + RR42_RS01050 0.59 -1.1
247,723 - RR42_RS01050 0.59 +0.9
247,723 - RR42_RS01050 0.59 -2.2
247,791 + RR42_RS01050 0.67 -2.3
247,792 - RR42_RS01050 0.67 +0.8
247,792 - RR42_RS01050 0.67 -1.0
247,842 + RR42_RS01050 0.73 +0.3
247,843 - RR42_RS01050 0.73 -0.9
248,028 + -0.8
248,028 + +0.4
248,028 + -0.6
248,028 + -2.9
248,029 - -0.8
248,029 - -1.4
248,029 - -0.8
248,029 - -0.8
248,165 - -1.2
248,214 - -0.9
248,236 + -0.3
248,237 - -1.1
248,237 - -0.7
248,237 - +0.2
248,237 - +1.9
248,237 - -0.3
248,237 - -0.7
248,278 + +0.8
248,278 + +1.0
248,393 + +1.3
248,393 + +0.7
248,393 + +2.2
248,393 + -0.6
248,393 + -1.6
248,393 + -0.3
248,393 + -2.0
248,393 + -0.5
248,394 - -0.5
248,394 - +0.0
248,394 - -1.2
248,412 + -2.2
248,683 + RR42_RS01055 0.27 +0.3
248,683 + RR42_RS01055 0.27 -0.2
248,683 + RR42_RS01055 0.27 +0.2
248,704 - RR42_RS01055 0.29 -0.7
248,704 - RR42_RS01055 0.29 +1.4
248,854 + RR42_RS01055 0.44 +1.3
248,854 + RR42_RS01055 0.44 -0.6
248,854 + RR42_RS01055 0.44 -0.0
248,854 + RR42_RS01055 0.44 -0.4
248,855 - RR42_RS01055 0.44 -3.0
248,855 - RR42_RS01055 0.44 +0.0
248,855 - RR42_RS01055 0.44 -0.8
248,856 + RR42_RS01055 0.45 -1.1
248,857 - RR42_RS01055 0.45 +0.5
248,857 - RR42_RS01055 0.45 -1.9
248,971 + RR42_RS01055 0.56 +0.2
248,972 - RR42_RS01055 0.56 +0.5
248,972 - RR42_RS01055 0.56 -0.0
249,082 + RR42_RS01055 0.67 -1.4
249,082 + RR42_RS01055 0.67 -0.5
249,082 + RR42_RS01055 0.67 -1.6
249,082 + RR42_RS01055 0.67 -2.8

Or see this region's nucleotide sequence