Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00995

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00985 and RR42_RS00990 are separated by 10 nucleotidesRR42_RS00990 and RR42_RS00995 are separated by 158 nucleotidesRR42_RS00995 and RR42_RS01000 are separated by 17 nucleotides RR42_RS00985: RR42_RS00985 - acetyltransferase, at 231,882 to 232,496 _RS00985 RR42_RS00990: RR42_RS00990 - GntR family transcriptional regulator, at 232,507 to 233,244 _RS00990 RR42_RS00995: RR42_RS00995 - sodium:cation symporter, at 233,403 to 234,932 _RS00995 RR42_RS01000: RR42_RS01000 - hypothetical protein, at 234,950 to 237,358 _RS01000 Position (kb) 233 234 235Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 232.416 kb on + strand, within RR42_RS00985at 232.442 kb on + strandat 232.442 kb on + strandat 232.443 kb on - strandat 232.443 kb on - strandat 232.443 kb on - strandat 232.508 kb on + strandat 232.508 kb on + strandat 232.537 kb on - strandat 232.553 kb on + strandat 232.554 kb on - strandat 232.751 kb on + strand, within RR42_RS00990at 232.751 kb on + strand, within RR42_RS00990at 232.751 kb on + strand, within RR42_RS00990at 232.751 kb on + strand, within RR42_RS00990at 232.890 kb on + strand, within RR42_RS00990at 232.977 kb on - strand, within RR42_RS00990at 232.992 kb on + strand, within RR42_RS00990at 232.993 kb on - strand, within RR42_RS00990at 232.993 kb on - strand, within RR42_RS00990at 232.993 kb on - strand, within RR42_RS00990at 233.247 kb on - strandat 233.452 kb on + strandat 233.457 kb on + strandat 233.457 kb on + strandat 233.458 kb on - strandat 233.458 kb on - strandat 233.458 kb on - strandat 233.458 kb on - strandat 233.608 kb on + strand, within RR42_RS00995at 233.850 kb on - strand, within RR42_RS00995at 233.933 kb on + strand, within RR42_RS00995at 233.934 kb on - strand, within RR42_RS00995at 234.030 kb on + strand, within RR42_RS00995at 234.030 kb on + strand, within RR42_RS00995at 234.031 kb on - strand, within RR42_RS00995at 234.080 kb on + strand, within RR42_RS00995at 234.080 kb on + strand, within RR42_RS00995at 234.081 kb on - strand, within RR42_RS00995at 234.130 kb on - strand, within RR42_RS00995at 234.130 kb on - strand, within RR42_RS00995at 234.159 kb on + strand, within RR42_RS00995at 234.159 kb on + strand, within RR42_RS00995at 234.160 kb on - strand, within RR42_RS00995at 234.201 kb on + strand, within RR42_RS00995at 234.201 kb on + strand, within RR42_RS00995at 234.202 kb on - strand, within RR42_RS00995at 234.202 kb on - strand, within RR42_RS00995at 234.540 kb on + strand, within RR42_RS00995at 234.738 kb on + strand, within RR42_RS00995at 234.739 kb on - strand, within RR42_RS00995at 234.739 kb on - strand, within RR42_RS00995at 234.777 kb on + strand, within RR42_RS00995at 234.779 kb on + strand, within RR42_RS00995at 234.779 kb on + strand, within RR42_RS00995at 234.876 kb on + strandat 234.877 kb on - strandat 234.877 kb on - strandat 234.877 kb on - strandat 234.877 kb on - strandat 234.877 kb on - strandat 234.882 kb on + strandat 234.882 kb on + strandat 234.882 kb on + strandat 234.883 kb on - strandat 234.883 kb on - strandat 234.883 kb on - strandat 235.031 kb on + strandat 235.031 kb on + strandat 235.031 kb on + strandat 235.032 kb on - strandat 235.124 kb on + strandat 235.124 kb on + strandat 235.124 kb on + strandat 235.124 kb on + strandat 235.185 kb on - strandat 235.232 kb on + strand, within RR42_RS01000at 235.232 kb on + strand, within RR42_RS01000at 235.233 kb on - strand, within RR42_RS01000at 235.233 kb on - strand, within RR42_RS01000at 235.233 kb on - strand, within RR42_RS01000at 235.233 kb on - strand, within RR42_RS01000at 235.454 kb on - strand, within RR42_RS01000at 235.481 kb on + strand, within RR42_RS01000at 235.481 kb on + strand, within RR42_RS01000at 235.481 kb on + strand, within RR42_RS01000at 235.481 kb on + strand, within RR42_RS01000at 235.482 kb on - strand, within RR42_RS01000at 235.482 kb on - strand, within RR42_RS01000at 235.495 kb on - strand, within RR42_RS01000at 235.645 kb on + strand, within RR42_RS01000at 235.645 kb on + strand, within RR42_RS01000at 235.645 kb on + strand, within RR42_RS01000at 235.646 kb on - strand, within RR42_RS01000at 235.672 kb on - strand, within RR42_RS01000at 235.880 kb on + strand, within RR42_RS01000at 235.880 kb on + strand, within RR42_RS01000at 235.880 kb on + strand, within RR42_RS01000

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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232,416 + RR42_RS00985 0.87 -3.1
232,442 + -0.7
232,442 + +1.6
232,443 - +2.4
232,443 - -1.7
232,443 - +0.8
232,508 + -1.0
232,508 + +1.2
232,537 - -0.2
232,553 + +1.9
232,554 - -0.2
232,751 + RR42_RS00990 0.33 +3.0
232,751 + RR42_RS00990 0.33 +1.2
232,751 + RR42_RS00990 0.33 +0.3
232,751 + RR42_RS00990 0.33 -0.1
232,890 + RR42_RS00990 0.52 +0.4
232,977 - RR42_RS00990 0.64 +0.3
232,992 + RR42_RS00990 0.66 -0.2
232,993 - RR42_RS00990 0.66 +1.9
232,993 - RR42_RS00990 0.66 -2.2
232,993 - RR42_RS00990 0.66 -0.5
233,247 - +0.4
233,452 + +0.2
233,457 + -0.5
233,457 + -0.4
233,458 - +1.0
233,458 - -1.5
233,458 - -1.2
233,458 - -0.5
233,608 + RR42_RS00995 0.13 -0.5
233,850 - RR42_RS00995 0.29 -0.7
233,933 + RR42_RS00995 0.35 -0.4
233,934 - RR42_RS00995 0.35 -0.6
234,030 + RR42_RS00995 0.41 +0.4
234,030 + RR42_RS00995 0.41 +1.2
234,031 - RR42_RS00995 0.41 +0.6
234,080 + RR42_RS00995 0.44 +0.5
234,080 + RR42_RS00995 0.44 +0.1
234,081 - RR42_RS00995 0.44 +1.0
234,130 - RR42_RS00995 0.48 +1.8
234,130 - RR42_RS00995 0.48 +0.7
234,159 + RR42_RS00995 0.49 +0.1
234,159 + RR42_RS00995 0.49 -0.1
234,160 - RR42_RS00995 0.49 -0.1
234,201 + RR42_RS00995 0.52 -0.9
234,201 + RR42_RS00995 0.52 +0.8
234,202 - RR42_RS00995 0.52 +0.8
234,202 - RR42_RS00995 0.52 -0.9
234,540 + RR42_RS00995 0.74 -0.6
234,738 + RR42_RS00995 0.87 -1.0
234,739 - RR42_RS00995 0.87 +0.9
234,739 - RR42_RS00995 0.87 -1.6
234,777 + RR42_RS00995 0.90 +0.0
234,779 + RR42_RS00995 0.90 -1.4
234,779 + RR42_RS00995 0.90 -1.2
234,876 + +0.1
234,877 - -0.4
234,877 - +0.9
234,877 - -0.2
234,877 - +1.0
234,877 - +1.0
234,882 + +0.2
234,882 + +0.7
234,882 + +0.4
234,883 - +1.8
234,883 - +0.3
234,883 - +0.7
235,031 + -0.2
235,031 + -1.0
235,031 + +1.3
235,032 - -0.7
235,124 + -0.2
235,124 + +0.0
235,124 + +1.2
235,124 + +0.2
235,185 - -1.6
235,232 + RR42_RS01000 0.12 +1.0
235,232 + RR42_RS01000 0.12 +0.0
235,233 - RR42_RS01000 0.12 -0.1
235,233 - RR42_RS01000 0.12 +1.4
235,233 - RR42_RS01000 0.12 -0.6
235,233 - RR42_RS01000 0.12 -0.4
235,454 - RR42_RS01000 0.21 +0.3
235,481 + RR42_RS01000 0.22 -1.1
235,481 + RR42_RS01000 0.22 +0.1
235,481 + RR42_RS01000 0.22 +0.0
235,481 + RR42_RS01000 0.22 -1.7
235,482 - RR42_RS01000 0.22 +0.5
235,482 - RR42_RS01000 0.22 +0.5
235,495 - RR42_RS01000 0.23 +0.5
235,645 + RR42_RS01000 0.29 -0.5
235,645 + RR42_RS01000 0.29 +0.3
235,645 + RR42_RS01000 0.29 +1.4
235,646 - RR42_RS01000 0.29 -0.9
235,672 - RR42_RS01000 0.30 +0.4
235,880 + RR42_RS01000 0.39 -0.3
235,880 + RR42_RS01000 0.39 +0.9
235,880 + RR42_RS01000 0.39 -1.5

Or see this region's nucleotide sequence