Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00875 and RR42_RS00880 overlap by 4 nucleotides RR42_RS00880 and RR42_RS00885 are separated by 93 nucleotides
RR42_RS00875: RR42_RS00875 - isocitrate dehydrogenase, at 211,201 to 213,045
_RS00875
RR42_RS00880: RR42_RS00880 - carbonate dehydratase, at 213,042 to 213,713
_RS00880
RR42_RS00885: RR42_RS00885 - acetyl-CoA acetyltransferase, at 213,807 to 215,003
_RS00885
Position (kb) 213
214 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 212.090 kb on - strand, within RR42_RS00875 at 212.090 kb on - strand, within RR42_RS00875 at 212.236 kb on + strand, within RR42_RS00875 at 212.236 kb on + strand, within RR42_RS00875 at 212.236 kb on + strand, within RR42_RS00875 at 212.237 kb on - strand, within RR42_RS00875 at 212.261 kb on - strand, within RR42_RS00875 at 212.261 kb on - strand, within RR42_RS00875 at 212.309 kb on - strand, within RR42_RS00875 at 212.447 kb on - strand, within RR42_RS00875 at 212.494 kb on + strand, within RR42_RS00875 at 212.494 kb on + strand, within RR42_RS00875 at 212.495 kb on - strand, within RR42_RS00875 at 212.495 kb on - strand, within RR42_RS00875 at 212.496 kb on + strand, within RR42_RS00875 at 212.496 kb on + strand, within RR42_RS00875 at 212.610 kb on + strand, within RR42_RS00875 at 212.632 kb on + strand, within RR42_RS00875 at 212.632 kb on + strand, within RR42_RS00875 at 212.632 kb on + strand, within RR42_RS00875 at 212.632 kb on + strand, within RR42_RS00875 at 212.632 kb on + strand, within RR42_RS00875 at 212.941 kb on + strand at 212.941 kb on + strand at 212.941 kb on + strand at 212.941 kb on + strand at 213.739 kb on + strand at 213.739 kb on + strand at 213.743 kb on + strand at 213.743 kb on + strand at 213.744 kb on - strand at 213.820 kb on + strand at 213.820 kb on + strand at 214.263 kb on + strand, within RR42_RS00885 at 214.264 kb on - strand, within RR42_RS00885 at 214.264 kb on - strand, within RR42_RS00885 at 214.329 kb on + strand, within RR42_RS00885 at 214.329 kb on + strand, within RR42_RS00885 at 214.329 kb on + strand, within RR42_RS00885 at 214.329 kb on + strand, within RR42_RS00885 at 214.329 kb on + strand, within RR42_RS00885 at 214.329 kb on + strand, within RR42_RS00885 at 214.338 kb on - strand, within RR42_RS00885
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 212,090 - RR42_RS00875 0.48 -0.6 212,090 - RR42_RS00875 0.48 -1.1 212,236 + RR42_RS00875 0.56 -2.3 212,236 + RR42_RS00875 0.56 -3.0 212,236 + RR42_RS00875 0.56 -0.5 212,237 - RR42_RS00875 0.56 +0.9 212,261 - RR42_RS00875 0.57 -0.0 212,261 - RR42_RS00875 0.57 -1.3 212,309 - RR42_RS00875 0.60 -1.5 212,447 - RR42_RS00875 0.68 -0.1 212,494 + RR42_RS00875 0.70 -2.3 212,494 + RR42_RS00875 0.70 +1.1 212,495 - RR42_RS00875 0.70 -1.9 212,495 - RR42_RS00875 0.70 -0.6 212,496 + RR42_RS00875 0.70 -0.9 212,496 + RR42_RS00875 0.70 +0.2 212,610 + RR42_RS00875 0.76 -0.7 212,632 + RR42_RS00875 0.78 -1.8 212,632 + RR42_RS00875 0.78 +0.2 212,632 + RR42_RS00875 0.78 -0.9 212,632 + RR42_RS00875 0.78 -1.6 212,632 + RR42_RS00875 0.78 +1.0 212,941 + +0.5 212,941 + -0.3 212,941 + -0.9 212,941 + -0.6 213,739 + -2.3 213,739 + -0.7 213,743 + -0.2 213,743 + +2.0 213,744 - +0.5 213,820 + +0.1 213,820 + +1.4 214,263 + RR42_RS00885 0.38 +0.3 214,264 - RR42_RS00885 0.38 -0.2 214,264 - RR42_RS00885 0.38 +0.2 214,329 + RR42_RS00885 0.44 -2.7 214,329 + RR42_RS00885 0.44 +0.5 214,329 + RR42_RS00885 0.44 +2.1 214,329 + RR42_RS00885 0.44 +0.3 214,329 + RR42_RS00885 0.44 -2.8 214,329 + RR42_RS00885 0.44 +0.7 214,338 - RR42_RS00885 0.44 +0.2
Or see this region's nucleotide sequence