Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS00870 and RR42_RS00875 are separated by 161 nucleotides RR42_RS00875 and RR42_RS00880 overlap by 4 nucleotides RR42_RS00880 and RR42_RS00885 are separated by 93 nucleotides
RR42_RS00870: RR42_RS00870 - isovaleryl-CoA dehydrogenase, at 209,849 to 211,039
_RS00870
RR42_RS00875: RR42_RS00875 - isocitrate dehydrogenase, at 211,201 to 213,045
_RS00875
RR42_RS00880: RR42_RS00880 - carbonate dehydratase, at 213,042 to 213,713
_RS00880
RR42_RS00885: RR42_RS00885 - acetyl-CoA acetyltransferase, at 213,807 to 215,003
_RS00885
Position (kb) 211
212
213
214 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 211.155 kb on + strand at 211.184 kb on - strand at 211.240 kb on + strand at 211.381 kb on + strand at 211.381 kb on + strand at 211.426 kb on + strand, within RR42_RS00875 at 211.426 kb on + strand, within RR42_RS00875 at 211.427 kb on - strand, within RR42_RS00875 at 211.427 kb on - strand, within RR42_RS00875 at 211.441 kb on - strand, within RR42_RS00875 at 211.477 kb on + strand, within RR42_RS00875 at 211.478 kb on - strand, within RR42_RS00875 at 211.478 kb on - strand, within RR42_RS00875 at 211.564 kb on + strand, within RR42_RS00875 at 211.564 kb on + strand, within RR42_RS00875 at 211.565 kb on - strand, within RR42_RS00875 at 211.565 kb on - strand, within RR42_RS00875 at 211.612 kb on + strand, within RR42_RS00875 at 211.612 kb on + strand, within RR42_RS00875 at 211.612 kb on + strand, within RR42_RS00875 at 211.613 kb on - strand, within RR42_RS00875 at 211.658 kb on - strand, within RR42_RS00875 at 211.661 kb on - strand, within RR42_RS00875 at 211.711 kb on - strand, within RR42_RS00875 at 211.752 kb on + strand, within RR42_RS00875 at 211.759 kb on + strand, within RR42_RS00875 at 211.760 kb on - strand, within RR42_RS00875 at 211.760 kb on - strand, within RR42_RS00875 at 212.038 kb on + strand, within RR42_RS00875 at 212.038 kb on + strand, within RR42_RS00875 at 212.039 kb on - strand, within RR42_RS00875 at 212.039 kb on - strand, within RR42_RS00875 at 212.039 kb on - strand, within RR42_RS00875 at 212.090 kb on - strand, within RR42_RS00875 at 212.090 kb on - strand, within RR42_RS00875 at 212.236 kb on + strand, within RR42_RS00875 at 212.236 kb on + strand, within RR42_RS00875 at 212.236 kb on + strand, within RR42_RS00875 at 212.237 kb on - strand, within RR42_RS00875 at 212.261 kb on - strand, within RR42_RS00875 at 212.261 kb on - strand, within RR42_RS00875 at 212.309 kb on - strand, within RR42_RS00875 at 212.447 kb on - strand, within RR42_RS00875 at 212.494 kb on + strand, within RR42_RS00875 at 212.494 kb on + strand, within RR42_RS00875 at 212.495 kb on - strand, within RR42_RS00875 at 212.495 kb on - strand, within RR42_RS00875 at 212.496 kb on + strand, within RR42_RS00875 at 212.496 kb on + strand, within RR42_RS00875 at 212.610 kb on + strand, within RR42_RS00875 at 212.632 kb on + strand, within RR42_RS00875 at 212.632 kb on + strand, within RR42_RS00875 at 212.632 kb on + strand, within RR42_RS00875 at 212.632 kb on + strand, within RR42_RS00875 at 212.632 kb on + strand, within RR42_RS00875 at 212.941 kb on + strand at 212.941 kb on + strand at 212.941 kb on + strand at 212.941 kb on + strand at 213.739 kb on + strand at 213.739 kb on + strand at 213.743 kb on + strand at 213.743 kb on + strand at 213.744 kb on - strand at 213.820 kb on + strand at 213.820 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL remove 211,155 + -1.0 211,184 - +0.8 211,240 + -1.3 211,381 + +0.7 211,381 + -0.1 211,426 + RR42_RS00875 0.12 +0.4 211,426 + RR42_RS00875 0.12 -1.9 211,427 - RR42_RS00875 0.12 +0.3 211,427 - RR42_RS00875 0.12 +1.1 211,441 - RR42_RS00875 0.13 -0.5 211,477 + RR42_RS00875 0.15 +0.9 211,478 - RR42_RS00875 0.15 +0.3 211,478 - RR42_RS00875 0.15 +0.3 211,564 + RR42_RS00875 0.20 +1.2 211,564 + RR42_RS00875 0.20 -0.1 211,565 - RR42_RS00875 0.20 -1.0 211,565 - RR42_RS00875 0.20 +0.7 211,612 + RR42_RS00875 0.22 -0.0 211,612 + RR42_RS00875 0.22 -0.6 211,612 + RR42_RS00875 0.22 +1.3 211,613 - RR42_RS00875 0.22 -0.6 211,658 - RR42_RS00875 0.25 +0.7 211,661 - RR42_RS00875 0.25 -0.4 211,711 - RR42_RS00875 0.28 -0.2 211,752 + RR42_RS00875 0.30 -1.1 211,759 + RR42_RS00875 0.30 -0.8 211,760 - RR42_RS00875 0.30 -0.3 211,760 - RR42_RS00875 0.30 -0.5 212,038 + RR42_RS00875 0.45 -0.2 212,038 + RR42_RS00875 0.45 -0.7 212,039 - RR42_RS00875 0.45 -1.3 212,039 - RR42_RS00875 0.45 -1.5 212,039 - RR42_RS00875 0.45 -0.4 212,090 - RR42_RS00875 0.48 -0.6 212,090 - RR42_RS00875 0.48 -1.1 212,236 + RR42_RS00875 0.56 -2.3 212,236 + RR42_RS00875 0.56 -3.0 212,236 + RR42_RS00875 0.56 -0.5 212,237 - RR42_RS00875 0.56 +0.9 212,261 - RR42_RS00875 0.57 -0.0 212,261 - RR42_RS00875 0.57 -1.3 212,309 - RR42_RS00875 0.60 -1.5 212,447 - RR42_RS00875 0.68 -0.1 212,494 + RR42_RS00875 0.70 -2.3 212,494 + RR42_RS00875 0.70 +1.1 212,495 - RR42_RS00875 0.70 -1.9 212,495 - RR42_RS00875 0.70 -0.6 212,496 + RR42_RS00875 0.70 -0.9 212,496 + RR42_RS00875 0.70 +0.2 212,610 + RR42_RS00875 0.76 -0.7 212,632 + RR42_RS00875 0.78 -1.8 212,632 + RR42_RS00875 0.78 +0.2 212,632 + RR42_RS00875 0.78 -0.9 212,632 + RR42_RS00875 0.78 -1.6 212,632 + RR42_RS00875 0.78 +1.0 212,941 + +0.5 212,941 + -0.3 212,941 + -0.9 212,941 + -0.6 213,739 + -2.3 213,739 + -0.7 213,743 + -0.2 213,743 + +2.0 213,744 - +0.5 213,820 + +0.1 213,820 + +1.4
Or see this region's nucleotide sequence