Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00870

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00860 and RR42_RS00865 are separated by 85 nucleotidesRR42_RS00865 and RR42_RS00870 are separated by 72 nucleotidesRR42_RS00870 and RR42_RS00875 are separated by 161 nucleotides RR42_RS00860: RR42_RS00860 - MerR family transcriptional regulator, at 208,798 to 209,232 _RS00860 RR42_RS00865: RR42_RS00865 - phenylacetic acid degradation protein PaaI, at 209,318 to 209,776 _RS00865 RR42_RS00870: RR42_RS00870 - isovaleryl-CoA dehydrogenase, at 209,849 to 211,039 _RS00870 RR42_RS00875: RR42_RS00875 - isocitrate dehydrogenase, at 211,201 to 213,045 _RS00875 Position (kb) 209 210 211 212Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 208.882 kb on + strand, within RR42_RS00860at 208.945 kb on - strand, within RR42_RS00860at 209.036 kb on - strand, within RR42_RS00860at 209.036 kb on - strand, within RR42_RS00860at 209.151 kb on - strand, within RR42_RS00860at 209.233 kb on + strandat 209.242 kb on - strandat 209.280 kb on - strandat 209.290 kb on - strandat 209.295 kb on - strandat 209.455 kb on + strand, within RR42_RS00865at 209.455 kb on + strand, within RR42_RS00865at 209.456 kb on - strand, within RR42_RS00865at 209.456 kb on - strand, within RR42_RS00865at 209.456 kb on - strand, within RR42_RS00865at 209.456 kb on - strand, within RR42_RS00865at 209.591 kb on + strand, within RR42_RS00865at 209.591 kb on + strand, within RR42_RS00865at 209.592 kb on - strand, within RR42_RS00865at 209.691 kb on + strand, within RR42_RS00865at 209.691 kb on + strand, within RR42_RS00865at 209.691 kb on + strand, within RR42_RS00865at 209.691 kb on + strand, within RR42_RS00865at 209.691 kb on + strand, within RR42_RS00865at 209.691 kb on + strand, within RR42_RS00865at 209.691 kb on + strand, within RR42_RS00865at 209.691 kb on + strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.692 kb on - strand, within RR42_RS00865at 209.693 kb on + strand, within RR42_RS00865at 209.693 kb on + strand, within RR42_RS00865at 209.693 kb on + strand, within RR42_RS00865at 209.693 kb on + strand, within RR42_RS00865at 209.694 kb on - strand, within RR42_RS00865at 209.694 kb on - strand, within RR42_RS00865at 209.694 kb on - strand, within RR42_RS00865at 209.695 kb on + strand, within RR42_RS00865at 209.695 kb on + strand, within RR42_RS00865at 209.695 kb on + strand, within RR42_RS00865at 209.695 kb on + strand, within RR42_RS00865at 209.696 kb on - strand, within RR42_RS00865at 209.696 kb on - strand, within RR42_RS00865at 209.696 kb on - strand, within RR42_RS00865at 209.764 kb on - strandat 209.801 kb on + strandat 209.802 kb on - strandat 209.802 kb on - strandat 209.802 kb on - strandat 209.901 kb on + strandat 209.901 kb on + strandat 209.901 kb on + strandat 209.901 kb on + strandat 209.901 kb on + strandat 209.902 kb on - strandat 209.902 kb on - strandat 209.902 kb on - strandat 209.902 kb on - strandat 209.902 kb on - strandat 209.902 kb on - strandat 209.902 kb on - strandat 211.155 kb on + strandat 211.184 kb on - strandat 211.240 kb on + strandat 211.381 kb on + strandat 211.381 kb on + strandat 211.426 kb on + strand, within RR42_RS00875at 211.426 kb on + strand, within RR42_RS00875at 211.427 kb on - strand, within RR42_RS00875at 211.427 kb on - strand, within RR42_RS00875at 211.441 kb on - strand, within RR42_RS00875at 211.477 kb on + strand, within RR42_RS00875at 211.478 kb on - strand, within RR42_RS00875at 211.478 kb on - strand, within RR42_RS00875at 211.564 kb on + strand, within RR42_RS00875at 211.564 kb on + strand, within RR42_RS00875at 211.565 kb on - strand, within RR42_RS00875at 211.565 kb on - strand, within RR42_RS00875at 211.612 kb on + strand, within RR42_RS00875at 211.612 kb on + strand, within RR42_RS00875at 211.612 kb on + strand, within RR42_RS00875at 211.613 kb on - strand, within RR42_RS00875at 211.658 kb on - strand, within RR42_RS00875at 211.661 kb on - strand, within RR42_RS00875at 211.711 kb on - strand, within RR42_RS00875at 211.752 kb on + strand, within RR42_RS00875at 211.759 kb on + strand, within RR42_RS00875at 211.760 kb on - strand, within RR42_RS00875at 211.760 kb on - strand, within RR42_RS00875at 212.038 kb on + strand, within RR42_RS00875at 212.038 kb on + strand, within RR42_RS00875at 212.039 kb on - strand, within RR42_RS00875at 212.039 kb on - strand, within RR42_RS00875at 212.039 kb on - strand, within RR42_RS00875

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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208,882 + RR42_RS00860 0.19 -1.0
208,945 - RR42_RS00860 0.34 -2.8
209,036 - RR42_RS00860 0.55 -1.3
209,036 - RR42_RS00860 0.55 -1.4
209,151 - RR42_RS00860 0.81 -1.4
209,233 + +0.0
209,242 - -0.3
209,280 - -0.5
209,290 - +1.2
209,295 - +0.6
209,455 + RR42_RS00865 0.30 +1.1
209,455 + RR42_RS00865 0.30 +0.3
209,456 - RR42_RS00865 0.30 -1.4
209,456 - RR42_RS00865 0.30 -1.9
209,456 - RR42_RS00865 0.30 +1.8
209,456 - RR42_RS00865 0.30 +0.1
209,591 + RR42_RS00865 0.59 +1.5
209,591 + RR42_RS00865 0.59 +0.4
209,592 - RR42_RS00865 0.60 +1.0
209,691 + RR42_RS00865 0.81 -0.4
209,691 + RR42_RS00865 0.81 +0.3
209,691 + RR42_RS00865 0.81 -1.9
209,691 + RR42_RS00865 0.81 -0.8
209,691 + RR42_RS00865 0.81 -1.8
209,691 + RR42_RS00865 0.81 -0.2
209,691 + RR42_RS00865 0.81 -0.4
209,691 + RR42_RS00865 0.81 +0.1
209,692 - RR42_RS00865 0.81 +0.0
209,692 - RR42_RS00865 0.81 +0.0
209,692 - RR42_RS00865 0.81 -0.6
209,692 - RR42_RS00865 0.81 -1.0
209,692 - RR42_RS00865 0.81 +0.9
209,692 - RR42_RS00865 0.81 -0.2
209,692 - RR42_RS00865 0.81 +0.5
209,692 - RR42_RS00865 0.81 +0.7
209,692 - RR42_RS00865 0.81 +0.6
209,692 - RR42_RS00865 0.81 -0.3
209,692 - RR42_RS00865 0.81 -0.5
209,692 - RR42_RS00865 0.81 +0.6
209,692 - RR42_RS00865 0.81 -0.7
209,693 + RR42_RS00865 0.82 +0.6
209,693 + RR42_RS00865 0.82 -2.6
209,693 + RR42_RS00865 0.82 +1.4
209,693 + RR42_RS00865 0.82 +0.8
209,694 - RR42_RS00865 0.82 +0.1
209,694 - RR42_RS00865 0.82 -0.3
209,694 - RR42_RS00865 0.82 +0.5
209,695 + RR42_RS00865 0.82 -1.3
209,695 + RR42_RS00865 0.82 +0.6
209,695 + RR42_RS00865 0.82 -0.7
209,695 + RR42_RS00865 0.82 -1.5
209,696 - RR42_RS00865 0.82 -0.3
209,696 - RR42_RS00865 0.82 +0.8
209,696 - RR42_RS00865 0.82 +0.1
209,764 - -1.3
209,801 + +1.4
209,802 - -1.3
209,802 - +0.5
209,802 - -0.4
209,901 + -1.5
209,901 + +0.6
209,901 + -2.4
209,901 + -0.0
209,901 + -0.4
209,902 - -0.1
209,902 - +0.2
209,902 - -0.7
209,902 - -0.9
209,902 - -0.1
209,902 - +1.0
209,902 - -1.2
211,155 + -1.0
211,184 - +0.8
211,240 + -1.3
211,381 + +0.7
211,381 + -0.1
211,426 + RR42_RS00875 0.12 +0.4
211,426 + RR42_RS00875 0.12 -1.9
211,427 - RR42_RS00875 0.12 +0.3
211,427 - RR42_RS00875 0.12 +1.1
211,441 - RR42_RS00875 0.13 -0.5
211,477 + RR42_RS00875 0.15 +0.9
211,478 - RR42_RS00875 0.15 +0.3
211,478 - RR42_RS00875 0.15 +0.3
211,564 + RR42_RS00875 0.20 +1.2
211,564 + RR42_RS00875 0.20 -0.1
211,565 - RR42_RS00875 0.20 -1.0
211,565 - RR42_RS00875 0.20 +0.7
211,612 + RR42_RS00875 0.22 -0.0
211,612 + RR42_RS00875 0.22 -0.6
211,612 + RR42_RS00875 0.22 +1.3
211,613 - RR42_RS00875 0.22 -0.6
211,658 - RR42_RS00875 0.25 +0.7
211,661 - RR42_RS00875 0.25 -0.4
211,711 - RR42_RS00875 0.28 -0.2
211,752 + RR42_RS00875 0.30 -1.1
211,759 + RR42_RS00875 0.30 -0.8
211,760 - RR42_RS00875 0.30 -0.3
211,760 - RR42_RS00875 0.30 -0.5
212,038 + RR42_RS00875 0.45 -0.2
212,038 + RR42_RS00875 0.45 -0.7
212,039 - RR42_RS00875 0.45 -1.3
212,039 - RR42_RS00875 0.45 -1.5
212,039 - RR42_RS00875 0.45 -0.4

Or see this region's nucleotide sequence