Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00520

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00515 and RR42_RS00520 are separated by 142 nucleotidesRR42_RS00520 and RR42_RS00525 are separated by 353 nucleotides RR42_RS00515: RR42_RS00515 - phosphonate monoester hydrolase, at 134,882 to 136,441 _RS00515 RR42_RS00520: RR42_RS00520 - ABC transporter substrate-binding protein, at 136,584 to 137,531 _RS00520 RR42_RS00525: RR42_RS00525 - MarR family transcriptional regulator, at 137,885 to 138,400 _RS00525 Position (kb) 136 137 138Strain fitness (log2 ratio) -2 -1 0 1 2at 135.723 kb on + strand, within RR42_RS00515at 135.735 kb on + strand, within RR42_RS00515at 135.751 kb on + strand, within RR42_RS00515at 135.752 kb on - strand, within RR42_RS00515at 135.753 kb on + strand, within RR42_RS00515at 135.753 kb on + strand, within RR42_RS00515at 135.753 kb on + strand, within RR42_RS00515at 135.753 kb on + strand, within RR42_RS00515at 135.753 kb on + strand, within RR42_RS00515at 135.754 kb on - strand, within RR42_RS00515at 135.819 kb on + strand, within RR42_RS00515at 135.819 kb on + strand, within RR42_RS00515at 135.820 kb on - strand, within RR42_RS00515at 135.820 kb on - strand, within RR42_RS00515at 135.820 kb on - strand, within RR42_RS00515at 135.820 kb on - strand, within RR42_RS00515at 135.836 kb on + strand, within RR42_RS00515at 135.841 kb on + strand, within RR42_RS00515at 135.841 kb on + strand, within RR42_RS00515at 135.841 kb on + strand, within RR42_RS00515at 135.842 kb on - strand, within RR42_RS00515at 135.842 kb on - strand, within RR42_RS00515at 135.842 kb on - strand, within RR42_RS00515at 135.842 kb on - strand, within RR42_RS00515at 135.842 kb on - strand, within RR42_RS00515at 135.842 kb on - strand, within RR42_RS00515at 135.842 kb on - strand, within RR42_RS00515at 135.842 kb on - strand, within RR42_RS00515at 135.842 kb on - strand, within RR42_RS00515at 135.844 kb on - strand, within RR42_RS00515at 135.949 kb on - strand, within RR42_RS00515at 135.975 kb on + strand, within RR42_RS00515at 136.182 kb on + strand, within RR42_RS00515at 136.263 kb on + strand, within RR42_RS00515at 136.263 kb on + strand, within RR42_RS00515at 136.263 kb on + strand, within RR42_RS00515at 136.264 kb on - strand, within RR42_RS00515at 136.264 kb on - strand, within RR42_RS00515at 136.264 kb on - strand, within RR42_RS00515at 136.378 kb on - strandat 136.378 kb on - strandat 136.828 kb on + strand, within RR42_RS00520at 137.076 kb on + strand, within RR42_RS00520at 137.092 kb on + strand, within RR42_RS00520at 137.134 kb on + strand, within RR42_RS00520at 137.134 kb on + strand, within RR42_RS00520at 137.135 kb on - strand, within RR42_RS00520at 137.135 kb on - strand, within RR42_RS00520at 137.135 kb on - strand, within RR42_RS00520at 137.233 kb on + strand, within RR42_RS00520at 137.233 kb on + strand, within RR42_RS00520at 137.233 kb on + strand, within RR42_RS00520at 137.248 kb on + strand, within RR42_RS00520at 137.248 kb on + strand, within RR42_RS00520at 137.248 kb on + strand, within RR42_RS00520at 137.248 kb on + strand, within RR42_RS00520at 137.327 kb on - strand, within RR42_RS00520at 137.327 kb on - strand, within RR42_RS00520at 137.327 kb on - strandat 137.550 kb on + strandat 137.623 kb on + strandat 137.623 kb on + strandat 137.624 kb on - strandat 137.781 kb on + strandat 137.782 kb on - strandat 137.922 kb on - strandat 137.930 kb on + strandat 137.931 kb on - strandat 137.931 kb on - strandat 138.200 kb on + strand, within RR42_RS00525at 138.200 kb on + strand, within RR42_RS00525at 138.398 kb on + strandat 138.446 kb on + strandat 138.447 kb on - strandat 138.447 kb on - strandat 138.454 kb on + strandat 138.454 kb on + strandat 138.454 kb on + strandat 138.455 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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135,723 + RR42_RS00515 0.54 -2.0
135,735 + RR42_RS00515 0.55 +1.7
135,751 + RR42_RS00515 0.56 +1.0
135,752 - RR42_RS00515 0.56 +0.3
135,753 + RR42_RS00515 0.56 -1.4
135,753 + RR42_RS00515 0.56 -0.5
135,753 + RR42_RS00515 0.56 +0.8
135,753 + RR42_RS00515 0.56 -0.4
135,753 + RR42_RS00515 0.56 +0.3
135,754 - RR42_RS00515 0.56 -0.9
135,819 + RR42_RS00515 0.60 +0.3
135,819 + RR42_RS00515 0.60 +0.7
135,820 - RR42_RS00515 0.60 -0.3
135,820 - RR42_RS00515 0.60 +0.1
135,820 - RR42_RS00515 0.60 -2.1
135,820 - RR42_RS00515 0.60 -2.5
135,836 + RR42_RS00515 0.61 +0.7
135,841 + RR42_RS00515 0.61 -1.1
135,841 + RR42_RS00515 0.61 -0.4
135,841 + RR42_RS00515 0.61 +0.0
135,842 - RR42_RS00515 0.62 +0.2
135,842 - RR42_RS00515 0.62 +0.2
135,842 - RR42_RS00515 0.62 -1.8
135,842 - RR42_RS00515 0.62 +1.4
135,842 - RR42_RS00515 0.62 -0.4
135,842 - RR42_RS00515 0.62 +0.7
135,842 - RR42_RS00515 0.62 -0.1
135,842 - RR42_RS00515 0.62 +1.4
135,842 - RR42_RS00515 0.62 +0.8
135,844 - RR42_RS00515 0.62 +1.2
135,949 - RR42_RS00515 0.68 -0.2
135,975 + RR42_RS00515 0.70 +0.4
136,182 + RR42_RS00515 0.83 -0.9
136,263 + RR42_RS00515 0.89 -1.1
136,263 + RR42_RS00515 0.89 -0.5
136,263 + RR42_RS00515 0.89 +1.1
136,264 - RR42_RS00515 0.89 -0.1
136,264 - RR42_RS00515 0.89 +1.8
136,264 - RR42_RS00515 0.89 -2.3
136,378 - -1.6
136,378 - +1.2
136,828 + RR42_RS00520 0.26 -0.6
137,076 + RR42_RS00520 0.52 -1.6
137,092 + RR42_RS00520 0.54 +0.1
137,134 + RR42_RS00520 0.58 -0.8
137,134 + RR42_RS00520 0.58 +0.2
137,135 - RR42_RS00520 0.58 -0.2
137,135 - RR42_RS00520 0.58 +1.2
137,135 - RR42_RS00520 0.58 -1.6
137,233 + RR42_RS00520 0.68 -2.6
137,233 + RR42_RS00520 0.68 -0.6
137,233 + RR42_RS00520 0.68 -2.0
137,248 + RR42_RS00520 0.70 +0.2
137,248 + RR42_RS00520 0.70 +0.1
137,248 + RR42_RS00520 0.70 -1.0
137,248 + RR42_RS00520 0.70 -1.1
137,327 - RR42_RS00520 0.78 -1.5
137,327 - RR42_RS00520 0.78 +1.6
137,327 - -0.1
137,550 + +0.6
137,623 + +0.3
137,623 + -0.9
137,624 - -0.4
137,781 + -0.2
137,782 - +0.7
137,922 - +1.2
137,930 + +0.1
137,931 - -0.6
137,931 - +0.0
138,200 + RR42_RS00525 0.61 +1.1
138,200 + RR42_RS00525 0.61 -1.0
138,398 + -0.6
138,446 + -0.2
138,447 - +0.4
138,447 - -1.6
138,454 + +0.1
138,454 + +0.1
138,454 + +0.0
138,455 - -1.2

Or see this region's nucleotide sequence