Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00340

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00330 and RR42_RS00335 are separated by 95 nucleotidesRR42_RS00335 and RR42_RS00340 are separated by 21 nucleotidesRR42_RS00340 and RR42_RS00345 are separated by 152 nucleotides RR42_RS00330: RR42_RS00330 - glutathione peroxidase, at 92,479 to 93,117 _RS00330 RR42_RS00335: RR42_RS00335 - MBL fold metallo-hydrolase, at 93,213 to 94,004 _RS00335 RR42_RS00340: RR42_RS00340 - glutathione S-transferase, at 94,026 to 94,652 _RS00340 RR42_RS00345: RR42_RS00345 - LysR family transcriptional regulator, at 94,805 to 95,716 _RS00345 Position (kb) 94 95Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 93.043 kb on + strand, within RR42_RS00330at 93.043 kb on + strand, within RR42_RS00330at 93.043 kb on + strand, within RR42_RS00330at 93.043 kb on + strand, within RR42_RS00330at 93.044 kb on - strand, within RR42_RS00330at 93.044 kb on - strand, within RR42_RS00330at 93.044 kb on - strand, within RR42_RS00330at 93.046 kb on - strand, within RR42_RS00330at 93.046 kb on - strand, within RR42_RS00330at 93.116 kb on - strandat 93.183 kb on + strandat 93.184 kb on - strandat 93.226 kb on + strandat 93.226 kb on + strandat 93.228 kb on + strandat 93.229 kb on - strandat 93.229 kb on - strandat 93.366 kb on + strand, within RR42_RS00335at 93.367 kb on - strand, within RR42_RS00335at 93.367 kb on - strand, within RR42_RS00335at 93.378 kb on + strand, within RR42_RS00335at 93.378 kb on + strand, within RR42_RS00335at 93.378 kb on + strand, within RR42_RS00335at 93.378 kb on + strand, within RR42_RS00335at 93.379 kb on - strand, within RR42_RS00335at 93.379 kb on - strand, within RR42_RS00335at 93.379 kb on - strand, within RR42_RS00335at 93.396 kb on + strand, within RR42_RS00335at 93.420 kb on + strand, within RR42_RS00335at 93.420 kb on + strand, within RR42_RS00335at 93.420 kb on + strand, within RR42_RS00335at 93.420 kb on + strand, within RR42_RS00335at 93.420 kb on + strand, within RR42_RS00335at 93.421 kb on - strand, within RR42_RS00335at 93.421 kb on - strand, within RR42_RS00335at 93.421 kb on - strand, within RR42_RS00335at 93.421 kb on - strand, within RR42_RS00335at 93.421 kb on - strand, within RR42_RS00335at 93.450 kb on - strand, within RR42_RS00335at 93.569 kb on + strand, within RR42_RS00335at 93.570 kb on - strand, within RR42_RS00335at 93.666 kb on + strand, within RR42_RS00335at 93.666 kb on + strand, within RR42_RS00335at 93.666 kb on + strand, within RR42_RS00335at 93.666 kb on + strand, within RR42_RS00335at 93.667 kb on - strand, within RR42_RS00335at 93.795 kb on + strand, within RR42_RS00335at 93.795 kb on + strand, within RR42_RS00335at 93.796 kb on - strand, within RR42_RS00335at 93.796 kb on - strand, within RR42_RS00335at 93.969 kb on + strandat 93.969 kb on + strandat 93.969 kb on + strandat 93.969 kb on + strandat 93.969 kb on + strandat 93.969 kb on + strandat 93.969 kb on + strandat 93.970 kb on - strandat 93.970 kb on - strandat 93.970 kb on - strandat 94.114 kb on + strand, within RR42_RS00340at 94.115 kb on - strand, within RR42_RS00340at 94.168 kb on + strand, within RR42_RS00340at 94.168 kb on + strand, within RR42_RS00340at 94.204 kb on + strand, within RR42_RS00340at 94.204 kb on + strand, within RR42_RS00340at 94.204 kb on + strand, within RR42_RS00340at 94.205 kb on - strand, within RR42_RS00340at 94.426 kb on + strand, within RR42_RS00340at 94.426 kb on + strand, within RR42_RS00340at 94.426 kb on + strand, within RR42_RS00340at 94.426 kb on + strand, within RR42_RS00340at 94.426 kb on + strand, within RR42_RS00340at 94.427 kb on - strand, within RR42_RS00340at 94.427 kb on - strand, within RR42_RS00340at 94.504 kb on - strand, within RR42_RS00340at 94.510 kb on + strand, within RR42_RS00340at 94.510 kb on + strand, within RR42_RS00340at 94.510 kb on + strand, within RR42_RS00340at 94.511 kb on - strand, within RR42_RS00340at 94.511 kb on - strand, within RR42_RS00340at 94.639 kb on + strandat 94.639 kb on + strandat 94.639 kb on + strandat 94.640 kb on - strandat 94.642 kb on + strandat 94.643 kb on - strandat 94.735 kb on - strandat 94.812 kb on + strandat 94.813 kb on - strandat 94.818 kb on - strandat 94.985 kb on + strand, within RR42_RS00345at 94.986 kb on - strand, within RR42_RS00345

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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93,043 + RR42_RS00330 0.88 -0.0
93,043 + RR42_RS00330 0.88 -0.0
93,043 + RR42_RS00330 0.88 -0.7
93,043 + RR42_RS00330 0.88 -2.0
93,044 - RR42_RS00330 0.88 -2.5
93,044 - RR42_RS00330 0.88 +0.3
93,044 - RR42_RS00330 0.88 -0.3
93,046 - RR42_RS00330 0.89 +1.2
93,046 - RR42_RS00330 0.89 -0.2
93,116 - -2.1
93,183 + +0.1
93,184 - +0.3
93,226 + +2.2
93,226 + -0.7
93,228 + -0.1
93,229 - -0.1
93,229 - +0.7
93,366 + RR42_RS00335 0.19 -1.1
93,367 - RR42_RS00335 0.19 -3.6
93,367 - RR42_RS00335 0.19 +3.4
93,378 + RR42_RS00335 0.21 -0.7
93,378 + RR42_RS00335 0.21 +0.0
93,378 + RR42_RS00335 0.21 +0.5
93,378 + RR42_RS00335 0.21 +0.2
93,379 - RR42_RS00335 0.21 -0.9
93,379 - RR42_RS00335 0.21 +0.3
93,379 - RR42_RS00335 0.21 +0.6
93,396 + RR42_RS00335 0.23 +0.7
93,420 + RR42_RS00335 0.26 -0.0
93,420 + RR42_RS00335 0.26 +0.1
93,420 + RR42_RS00335 0.26 -0.9
93,420 + RR42_RS00335 0.26 -1.8
93,420 + RR42_RS00335 0.26 +0.1
93,421 - RR42_RS00335 0.26 +0.4
93,421 - RR42_RS00335 0.26 -0.5
93,421 - RR42_RS00335 0.26 -0.7
93,421 - RR42_RS00335 0.26 -1.9
93,421 - RR42_RS00335 0.26 +1.1
93,450 - RR42_RS00335 0.30 -1.0
93,569 + RR42_RS00335 0.45 -1.3
93,570 - RR42_RS00335 0.45 +0.2
93,666 + RR42_RS00335 0.57 +1.0
93,666 + RR42_RS00335 0.57 -0.8
93,666 + RR42_RS00335 0.57 -1.3
93,666 + RR42_RS00335 0.57 -0.8
93,667 - RR42_RS00335 0.57 +0.2
93,795 + RR42_RS00335 0.73 +0.4
93,795 + RR42_RS00335 0.73 +1.4
93,796 - RR42_RS00335 0.74 -0.2
93,796 - RR42_RS00335 0.74 -1.6
93,969 + +1.4
93,969 + -0.6
93,969 + -0.4
93,969 + +0.1
93,969 + +0.2
93,969 + -1.7
93,969 + +1.4
93,970 - +0.6
93,970 - -0.3
93,970 - +0.8
94,114 + RR42_RS00340 0.14 +0.0
94,115 - RR42_RS00340 0.14 +0.4
94,168 + RR42_RS00340 0.23 -1.5
94,168 + RR42_RS00340 0.23 +2.0
94,204 + RR42_RS00340 0.28 -0.0
94,204 + RR42_RS00340 0.28 +1.0
94,204 + RR42_RS00340 0.28 +0.3
94,205 - RR42_RS00340 0.29 -0.1
94,426 + RR42_RS00340 0.64 -1.3
94,426 + RR42_RS00340 0.64 +0.0
94,426 + RR42_RS00340 0.64 -1.1
94,426 + RR42_RS00340 0.64 +0.8
94,426 + RR42_RS00340 0.64 -0.3
94,427 - RR42_RS00340 0.64 -0.7
94,427 - RR42_RS00340 0.64 +0.6
94,504 - RR42_RS00340 0.76 +0.0
94,510 + RR42_RS00340 0.77 +0.4
94,510 + RR42_RS00340 0.77 -2.1
94,510 + RR42_RS00340 0.77 +0.2
94,511 - RR42_RS00340 0.77 -2.8
94,511 - RR42_RS00340 0.77 +0.2
94,639 + +0.7
94,639 + -1.9
94,639 + +1.5
94,640 - -1.3
94,642 + +0.2
94,643 - -1.8
94,735 - +0.2
94,812 + -0.3
94,813 - +0.4
94,818 - -1.3
94,985 + RR42_RS00345 0.20 -0.7
94,986 - RR42_RS00345 0.20 -0.3

Or see this region's nucleotide sequence