Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00240

Experiment: Carbon source Deoxyribonucleic from herring sperm 5 mg/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00235 and RR42_RS00240 are separated by 93 nucleotidesRR42_RS00240 and RR42_RS00245 are separated by 253 nucleotides RR42_RS00235: RR42_RS00235 - membrane protein, at 72,667 to 73,938 _RS00235 RR42_RS00240: RR42_RS00240 - nucleotide pyrophosphohydrolase, at 74,032 to 74,367 _RS00240 RR42_RS00245: RR42_RS00245 - microcystin degradation protein MlrC, at 74,621 to 76,102 _RS00245 Position (kb) 74 75Strain fitness (log2 ratio) -3 -2 -1 0 1at 73.108 kb on - strand, within RR42_RS00235at 73.500 kb on - strand, within RR42_RS00235at 73.558 kb on + strand, within RR42_RS00235at 73.559 kb on - strand, within RR42_RS00235at 73.771 kb on - strand, within RR42_RS00235at 73.850 kb on - strandat 73.944 kb on - strandat 74.010 kb on + strandat 74.104 kb on + strand, within RR42_RS00240at 74.105 kb on - strand, within RR42_RS00240at 74.105 kb on - strand, within RR42_RS00240at 74.105 kb on - strand, within RR42_RS00240at 74.105 kb on - strand, within RR42_RS00240at 74.257 kb on + strand, within RR42_RS00240at 74.258 kb on - strand, within RR42_RS00240at 74.659 kb on + strandat 74.660 kb on - strandat 74.660 kb on - strandat 74.850 kb on - strand, within RR42_RS00245at 75.081 kb on - strand, within RR42_RS00245at 75.099 kb on - strand, within RR42_RS00245at 75.314 kb on - strand, within RR42_RS00245

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
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73,108 - RR42_RS00235 0.35 -1.4
73,500 - RR42_RS00235 0.65 +1.3
73,558 + RR42_RS00235 0.70 +1.7
73,559 - RR42_RS00235 0.70 +0.2
73,771 - RR42_RS00235 0.87 -0.8
73,850 - -0.6
73,944 - -0.1
74,010 + +0.5
74,104 + RR42_RS00240 0.21 -1.4
74,105 - RR42_RS00240 0.22 -1.7
74,105 - RR42_RS00240 0.22 -1.6
74,105 - RR42_RS00240 0.22 +0.5
74,105 - RR42_RS00240 0.22 +1.2
74,257 + RR42_RS00240 0.67 -3.1
74,258 - RR42_RS00240 0.67 -0.4
74,659 + +0.6
74,660 - +1.0
74,660 - -1.0
74,850 - RR42_RS00245 0.15 -0.6
75,081 - RR42_RS00245 0.31 -0.1
75,099 - RR42_RS00245 0.32 -0.6
75,314 - RR42_RS00245 0.47 -0.6

Or see this region's nucleotide sequence