Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00330 and PGA1_65p00340 overlap by 2 nucleotides PGA1_65p00340 and PGA1_65p00350 are separated by 934 nucleotides
PGA1_65p00330: PGA1_65p00330 - type I secretion system ATPase, at 43,016 to 44,812
_65p00330
PGA1_65p00340: PGA1_65p00340 - Sulfotransferase family., at 44,811 to 46,031
_65p00340
PGA1_65p00350: PGA1_65p00350 - hemolysin-like protein, at 46,966 to 48,567
_65p00350
Position (kb) 44
45
46
47 Strain fitness (log2 ratio) -1
0
1
2 at 44.215 kb on - strand, within PGA1_65p00330 at 44.309 kb on - strand, within PGA1_65p00330 at 44.367 kb on + strand, within PGA1_65p00330 at 45.013 kb on - strand at 45.028 kb on + strand, within PGA1_65p00340 at 45.033 kb on + strand, within PGA1_65p00340 at 45.055 kb on + strand, within PGA1_65p00340 at 45.217 kb on + strand, within PGA1_65p00340 at 45.240 kb on + strand, within PGA1_65p00340 at 45.248 kb on - strand, within PGA1_65p00340 at 45.405 kb on - strand, within PGA1_65p00340 at 45.423 kb on - strand, within PGA1_65p00340 at 45.474 kb on - strand, within PGA1_65p00340 at 45.535 kb on + strand, within PGA1_65p00340 at 45.748 kb on - strand, within PGA1_65p00340 at 45.784 kb on + strand, within PGA1_65p00340 at 45.816 kb on + strand, within PGA1_65p00340 at 46.055 kb on - strand at 46.075 kb on - strand at 46.075 kb on - strand at 46.085 kb on - strand at 46.163 kb on - strand at 46.229 kb on + strand at 46.229 kb on + strand at 46.229 kb on + strand at 46.237 kb on - strand at 46.237 kb on - strand at 46.264 kb on + strand at 46.264 kb on + strand at 46.264 kb on + strand at 46.272 kb on - strand at 46.276 kb on + strand at 46.284 kb on - strand at 46.322 kb on + strand at 46.336 kb on + strand at 46.355 kb on - strand at 46.366 kb on + strand at 46.530 kb on - strand at 46.537 kb on + strand at 46.537 kb on + strand at 46.537 kb on + strand at 46.537 kb on + strand at 46.537 kb on + strand at 46.545 kb on - strand at 46.545 kb on - strand at 46.561 kb on + strand at 46.566 kb on + strand at 46.569 kb on - strand at 46.571 kb on + strand at 46.579 kb on - strand at 46.665 kb on + strand at 46.665 kb on + strand at 46.684 kb on - strand at 46.750 kb on - strand at 46.797 kb on - strand at 46.802 kb on - strand at 46.846 kb on + strand at 46.854 kb on - strand at 46.881 kb on + strand at 46.893 kb on + strand at 46.901 kb on - strand at 46.909 kb on + strand at 46.919 kb on + strand at 46.949 kb on + strand at 46.949 kb on + strand at 46.955 kb on - strand at 46.983 kb on + strand at 46.990 kb on + strand at 46.998 kb on - strand at 46.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (N) remove 44,215 - PGA1_65p00330 0.67 +0.7 44,309 - PGA1_65p00330 0.72 +0.2 44,367 + PGA1_65p00330 0.75 +1.7 45,013 - -0.9 45,028 + PGA1_65p00340 0.18 +1.5 45,033 + PGA1_65p00340 0.18 +0.7 45,055 + PGA1_65p00340 0.20 +0.5 45,217 + PGA1_65p00340 0.33 -0.2 45,240 + PGA1_65p00340 0.35 +2.2 45,248 - PGA1_65p00340 0.36 +1.7 45,405 - PGA1_65p00340 0.49 +0.3 45,423 - PGA1_65p00340 0.50 -0.3 45,474 - PGA1_65p00340 0.54 -0.5 45,535 + PGA1_65p00340 0.59 -0.5 45,748 - PGA1_65p00340 0.77 -0.3 45,784 + PGA1_65p00340 0.80 +0.1 45,816 + PGA1_65p00340 0.82 +1.6 46,055 - +1.5 46,075 - -1.2 46,075 - -0.9 46,085 - +0.6 46,163 - -0.7 46,229 + +1.3 46,229 + -0.9 46,229 + +0.2 46,237 - -0.6 46,237 - +1.7 46,264 + +0.7 46,264 + +0.1 46,264 + +0.3 46,272 - +0.1 46,276 + +2.7 46,284 - +0.7 46,322 + +0.5 46,336 + +2.0 46,355 - +0.4 46,366 + +0.1 46,530 - +0.7 46,537 + -1.1 46,537 + +0.4 46,537 + +1.9 46,537 + -0.3 46,537 + +0.1 46,545 - -0.3 46,545 - -0.1 46,561 + -0.6 46,566 + -0.7 46,569 - +2.1 46,571 + +0.8 46,579 - -0.3 46,665 + +0.2 46,665 + +0.1 46,684 - +2.0 46,750 - +0.0 46,797 - -0.5 46,802 - +0.6 46,846 + -0.0 46,854 - +2.3 46,881 + +0.3 46,893 + +1.7 46,901 - -0.6 46,909 + +1.0 46,919 + +0.4 46,949 + +2.7 46,949 + +0.5 46,955 - +0.6 46,983 + -0.5 46,990 + +0.5 46,998 - +1.2 46,998 - +1.1
Or see this region's nucleotide sequence