Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00100

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_78p00080 and PGA1_78p00090 are separated by 36 nucleotidesPGA1_78p00090 and PGA1_78p00100 are separated by 148 nucleotidesPGA1_78p00100 and PGA1_78p00110 are separated by 96 nucleotides PGA1_78p00080: PGA1_78p00080 - Predicted transmembrane transcriptional regulator (anti-sigma factor), at 9,075 to 9,917 _78p00080 PGA1_78p00090: PGA1_78p00090 - putative HTH-type transcriptional regulator, at 9,954 to 10,403 _78p00090 PGA1_78p00100: PGA1_78p00100 - flavohemoprotein Hmp, at 10,552 to 11,742 _78p00100 PGA1_78p00110: PGA1_78p00110 - putative transporter, MFS family, at 11,839 to 13,056 _78p00110 Position (kb) 10 11 12Strain fitness (log2 ratio) -2 -1 0 1 2at 10.252 kb on + strand, within PGA1_78p00090at 10.542 kb on + strandat 10.547 kb on + strandat 10.749 kb on - strand, within PGA1_78p00100at 10.893 kb on - strand, within PGA1_78p00100at 10.934 kb on - strand, within PGA1_78p00100at 11.230 kb on - strand, within PGA1_78p00100at 11.250 kb on - strand, within PGA1_78p00100at 11.287 kb on + strand, within PGA1_78p00100at 11.295 kb on - strand, within PGA1_78p00100at 11.603 kb on - strand, within PGA1_78p00100at 11.864 kb on + strandat 12.020 kb on + strand, within PGA1_78p00110at 12.047 kb on - strand, within PGA1_78p00110at 12.159 kb on + strand, within PGA1_78p00110at 12.287 kb on - strand, within PGA1_78p00110at 12.402 kb on + strand, within PGA1_78p00110at 12.459 kb on - strand, within PGA1_78p00110at 12.511 kb on + strand, within PGA1_78p00110

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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10,252 + PGA1_78p00090 0.66 +1.2
10,542 + -0.4
10,547 + +1.7
10,749 - PGA1_78p00100 0.17 -0.5
10,893 - PGA1_78p00100 0.29 +2.0
10,934 - PGA1_78p00100 0.32 +1.3
11,230 - PGA1_78p00100 0.57 +0.9
11,250 - PGA1_78p00100 0.59 -2.3
11,287 + PGA1_78p00100 0.62 -0.6
11,295 - PGA1_78p00100 0.62 +1.9
11,603 - PGA1_78p00100 0.88 -0.8
11,864 + +0.9
12,020 + PGA1_78p00110 0.15 +2.0
12,047 - PGA1_78p00110 0.17 -0.6
12,159 + PGA1_78p00110 0.26 -0.6
12,287 - PGA1_78p00110 0.37 +0.8
12,402 + PGA1_78p00110 0.46 +0.6
12,459 - PGA1_78p00110 0.51 +0.3
12,511 + PGA1_78p00110 0.55 -0.3

Or see this region's nucleotide sequence