Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c34670

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c34660 and PGA1_c34670 overlap by 4 nucleotidesPGA1_c34670 and PGA1_c34680 are separated by 49 nucleotides PGA1_c34660: PGA1_c34660 - putative extracellular solute-binding protein, at 3,638,079 to 3,638,924 _c34660 PGA1_c34670: PGA1_c34670 - proline iminopeptidase Pip, at 3,638,921 to 3,639,901 _c34670 PGA1_c34680: PGA1_c34680 - 3-demethylubiquinone-9 3-methyltransferase UbiG, at 3,639,951 to 3,640,697 _c34680 Position (kb) 3638 3639 3640Strain fitness (log2 ratio) -2 -1 0 1 2at 3638.031 kb on - strandat 3638.042 kb on - strandat 3638.050 kb on + strandat 3638.055 kb on + strandat 3638.933 kb on - strandat 3638.935 kb on - strandat 3638.960 kb on + strandat 3639.011 kb on - strandat 3639.064 kb on - strand, within PGA1_c34670at 3639.070 kb on - strand, within PGA1_c34670at 3639.077 kb on - strand, within PGA1_c34670at 3639.107 kb on - strand, within PGA1_c34670at 3639.140 kb on + strand, within PGA1_c34670at 3639.140 kb on + strand, within PGA1_c34670at 3639.148 kb on - strand, within PGA1_c34670at 3639.204 kb on - strand, within PGA1_c34670at 3639.212 kb on - strand, within PGA1_c34670at 3639.217 kb on - strand, within PGA1_c34670at 3639.250 kb on + strand, within PGA1_c34670at 3639.250 kb on + strand, within PGA1_c34670at 3639.251 kb on + strand, within PGA1_c34670at 3639.269 kb on + strand, within PGA1_c34670at 3639.279 kb on + strand, within PGA1_c34670at 3639.279 kb on + strand, within PGA1_c34670at 3639.284 kb on + strand, within PGA1_c34670at 3639.405 kb on + strand, within PGA1_c34670at 3639.438 kb on + strand, within PGA1_c34670at 3639.438 kb on - strand, within PGA1_c34670at 3639.438 kb on - strand, within PGA1_c34670at 3639.464 kb on + strand, within PGA1_c34670at 3639.497 kb on + strand, within PGA1_c34670at 3639.514 kb on - strand, within PGA1_c34670at 3639.514 kb on - strand, within PGA1_c34670at 3639.514 kb on - strand, within PGA1_c34670at 3639.549 kb on + strand, within PGA1_c34670at 3639.618 kb on + strand, within PGA1_c34670at 3639.618 kb on - strand, within PGA1_c34670at 3639.636 kb on - strand, within PGA1_c34670at 3639.643 kb on - strand, within PGA1_c34670at 3639.645 kb on + strand, within PGA1_c34670at 3639.679 kb on + strand, within PGA1_c34670at 3639.679 kb on + strand, within PGA1_c34670at 3639.679 kb on + strand, within PGA1_c34670at 3639.687 kb on - strand, within PGA1_c34670at 3639.695 kb on - strand, within PGA1_c34670at 3639.745 kb on - strand, within PGA1_c34670at 3639.763 kb on - strand, within PGA1_c34670at 3639.768 kb on + strand, within PGA1_c34670at 3639.768 kb on - strand, within PGA1_c34670at 3639.768 kb on - strand, within PGA1_c34670at 3639.798 kb on - strand, within PGA1_c34670at 3639.809 kb on + strandat 3639.819 kb on + strandat 3639.835 kb on + strandat 3639.835 kb on + strandat 3639.835 kb on + strandat 3639.843 kb on - strandat 3639.843 kb on - strandat 3639.863 kb on + strandat 3639.863 kb on + strandat 3639.863 kb on + strandat 3639.863 kb on + strandat 3639.864 kb on - strandat 3639.871 kb on - strandat 3639.871 kb on - strandat 3639.901 kb on + strandat 3639.907 kb on + strandat 3639.912 kb on + strandat 3639.912 kb on + strandat 3639.920 kb on - strandat 3639.920 kb on - strandat 3639.925 kb on - strandat 3640.718 kb on + strandat 3640.718 kb on + strandat 3640.726 kb on - strandat 3640.726 kb on - strandat 3640.726 kb on - strandat 3640.734 kb on - strandat 3640.795 kb on + strandat 3640.804 kb on + strandat 3640.804 kb on - strandat 3640.812 kb on - strandat 3640.836 kb on - strandat 3640.839 kb on - strandat 3640.845 kb on - strandat 3640.850 kb on - strandat 3640.852 kb on + strandat 3640.860 kb on - strandat 3640.873 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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3,638,031 - +0.3
3,638,042 - +0.0
3,638,050 + +0.8
3,638,055 + -0.2
3,638,933 - -0.2
3,638,935 - -0.4
3,638,960 + +0.7
3,639,011 - +0.8
3,639,064 - PGA1_c34670 0.15 +0.9
3,639,070 - PGA1_c34670 0.15 -0.1
3,639,077 - PGA1_c34670 0.16 -0.2
3,639,107 - PGA1_c34670 0.19 +0.4
3,639,140 + PGA1_c34670 0.22 +0.6
3,639,140 + PGA1_c34670 0.22 +0.8
3,639,148 - PGA1_c34670 0.23 -0.2
3,639,204 - PGA1_c34670 0.29 +0.4
3,639,212 - PGA1_c34670 0.30 +0.2
3,639,217 - PGA1_c34670 0.30 +0.1
3,639,250 + PGA1_c34670 0.34 +0.2
3,639,250 + PGA1_c34670 0.34 +0.4
3,639,251 + PGA1_c34670 0.34 -0.5
3,639,269 + PGA1_c34670 0.35 +0.4
3,639,279 + PGA1_c34670 0.36 +0.1
3,639,279 + PGA1_c34670 0.36 +0.3
3,639,284 + PGA1_c34670 0.37 +0.6
3,639,405 + PGA1_c34670 0.49 +0.0
3,639,438 + PGA1_c34670 0.53 -0.7
3,639,438 - PGA1_c34670 0.53 +0.6
3,639,438 - PGA1_c34670 0.53 +0.3
3,639,464 + PGA1_c34670 0.55 +0.2
3,639,497 + PGA1_c34670 0.59 +1.4
3,639,514 - PGA1_c34670 0.60 +0.5
3,639,514 - PGA1_c34670 0.60 +0.5
3,639,514 - PGA1_c34670 0.60 -0.1
3,639,549 + PGA1_c34670 0.64 -0.6
3,639,618 + PGA1_c34670 0.71 +0.4
3,639,618 - PGA1_c34670 0.71 -0.7
3,639,636 - PGA1_c34670 0.73 -0.1
3,639,643 - PGA1_c34670 0.74 +1.0
3,639,645 + PGA1_c34670 0.74 +1.8
3,639,679 + PGA1_c34670 0.77 +1.1
3,639,679 + PGA1_c34670 0.77 +1.0
3,639,679 + PGA1_c34670 0.77 +0.2
3,639,687 - PGA1_c34670 0.78 +0.9
3,639,695 - PGA1_c34670 0.79 +0.7
3,639,745 - PGA1_c34670 0.84 +0.3
3,639,763 - PGA1_c34670 0.86 -0.4
3,639,768 + PGA1_c34670 0.86 +0.8
3,639,768 - PGA1_c34670 0.86 -0.6
3,639,768 - PGA1_c34670 0.86 -0.2
3,639,798 - PGA1_c34670 0.89 +1.7
3,639,809 + +0.6
3,639,819 + -0.3
3,639,835 + +0.6
3,639,835 + -0.3
3,639,835 + +0.2
3,639,843 - +0.6
3,639,843 - +1.4
3,639,863 + +0.8
3,639,863 + +1.1
3,639,863 + +0.1
3,639,863 + -0.2
3,639,864 - +0.3
3,639,871 - -0.2
3,639,871 - +0.9
3,639,901 + -0.3
3,639,907 + +0.2
3,639,912 + -0.1
3,639,912 + +0.4
3,639,920 - +0.8
3,639,920 - -0.2
3,639,925 - +0.7
3,640,718 + -0.7
3,640,718 + +2.0
3,640,726 - +0.3
3,640,726 - -0.4
3,640,726 - +1.6
3,640,734 - -0.2
3,640,795 + -0.1
3,640,804 + +0.5
3,640,804 - -0.6
3,640,812 - +0.7
3,640,836 - -0.2
3,640,839 - -0.3
3,640,845 - -1.2
3,640,850 - +0.6
3,640,852 + -0.9
3,640,860 - -0.5
3,640,873 - -2.1

Or see this region's nucleotide sequence