Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c34660 and PGA1_c34670 overlap by 4 nucleotides PGA1_c34670 and PGA1_c34680 are separated by 49 nucleotides
PGA1_c34660: PGA1_c34660 - putative extracellular solute-binding protein, at 3,638,079 to 3,638,924
_c34660
PGA1_c34670: PGA1_c34670 - proline iminopeptidase Pip, at 3,638,921 to 3,639,901
_c34670
PGA1_c34680: PGA1_c34680 - 3-demethylubiquinone-9 3-methyltransferase UbiG, at 3,639,951 to 3,640,697
_c34680
Position (kb)
3638
3639
3640 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3638.031 kb on - strand at 3638.042 kb on - strand at 3638.050 kb on + strand at 3638.055 kb on + strand at 3638.933 kb on - strand at 3638.935 kb on - strand at 3638.960 kb on + strand at 3639.011 kb on - strand at 3639.064 kb on - strand, within PGA1_c34670 at 3639.070 kb on - strand, within PGA1_c34670 at 3639.077 kb on - strand, within PGA1_c34670 at 3639.107 kb on - strand, within PGA1_c34670 at 3639.140 kb on + strand, within PGA1_c34670 at 3639.140 kb on + strand, within PGA1_c34670 at 3639.148 kb on - strand, within PGA1_c34670 at 3639.204 kb on - strand, within PGA1_c34670 at 3639.212 kb on - strand, within PGA1_c34670 at 3639.217 kb on - strand, within PGA1_c34670 at 3639.250 kb on + strand, within PGA1_c34670 at 3639.250 kb on + strand, within PGA1_c34670 at 3639.251 kb on + strand, within PGA1_c34670 at 3639.269 kb on + strand, within PGA1_c34670 at 3639.279 kb on + strand, within PGA1_c34670 at 3639.279 kb on + strand, within PGA1_c34670 at 3639.284 kb on + strand, within PGA1_c34670 at 3639.405 kb on + strand, within PGA1_c34670 at 3639.438 kb on + strand, within PGA1_c34670 at 3639.438 kb on - strand, within PGA1_c34670 at 3639.438 kb on - strand, within PGA1_c34670 at 3639.464 kb on + strand, within PGA1_c34670 at 3639.497 kb on + strand, within PGA1_c34670 at 3639.514 kb on - strand, within PGA1_c34670 at 3639.514 kb on - strand, within PGA1_c34670 at 3639.514 kb on - strand, within PGA1_c34670 at 3639.549 kb on + strand, within PGA1_c34670 at 3639.618 kb on + strand, within PGA1_c34670 at 3639.618 kb on - strand, within PGA1_c34670 at 3639.636 kb on - strand, within PGA1_c34670 at 3639.643 kb on - strand, within PGA1_c34670 at 3639.645 kb on + strand, within PGA1_c34670 at 3639.679 kb on + strand, within PGA1_c34670 at 3639.679 kb on + strand, within PGA1_c34670 at 3639.679 kb on + strand, within PGA1_c34670 at 3639.687 kb on - strand, within PGA1_c34670 at 3639.695 kb on - strand, within PGA1_c34670 at 3639.745 kb on - strand, within PGA1_c34670 at 3639.763 kb on - strand, within PGA1_c34670 at 3639.768 kb on + strand, within PGA1_c34670 at 3639.768 kb on - strand, within PGA1_c34670 at 3639.768 kb on - strand, within PGA1_c34670 at 3639.798 kb on - strand, within PGA1_c34670 at 3639.809 kb on + strand at 3639.819 kb on + strand at 3639.835 kb on + strand at 3639.835 kb on + strand at 3639.835 kb on + strand at 3639.843 kb on - strand at 3639.843 kb on - strand at 3639.863 kb on + strand at 3639.863 kb on + strand at 3639.863 kb on + strand at 3639.863 kb on + strand at 3639.864 kb on - strand at 3639.871 kb on - strand at 3639.871 kb on - strand at 3639.901 kb on + strand at 3639.907 kb on + strand at 3639.912 kb on + strand at 3639.912 kb on + strand at 3639.920 kb on - strand at 3639.920 kb on - strand at 3639.925 kb on - strand at 3640.718 kb on + strand at 3640.718 kb on + strand at 3640.726 kb on - strand at 3640.726 kb on - strand at 3640.726 kb on - strand at 3640.734 kb on - strand at 3640.795 kb on + strand at 3640.804 kb on + strand at 3640.804 kb on - strand at 3640.812 kb on - strand at 3640.836 kb on - strand at 3640.839 kb on - strand at 3640.845 kb on - strand at 3640.850 kb on - strand at 3640.852 kb on + strand at 3640.860 kb on - strand at 3640.873 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (N) remove 3,638,031 - +0.3 3,638,042 - +0.0 3,638,050 + +0.8 3,638,055 + -0.2 3,638,933 - -0.2 3,638,935 - -0.4 3,638,960 + +0.7 3,639,011 - +0.8 3,639,064 - PGA1_c34670 0.15 +0.9 3,639,070 - PGA1_c34670 0.15 -0.1 3,639,077 - PGA1_c34670 0.16 -0.2 3,639,107 - PGA1_c34670 0.19 +0.4 3,639,140 + PGA1_c34670 0.22 +0.6 3,639,140 + PGA1_c34670 0.22 +0.8 3,639,148 - PGA1_c34670 0.23 -0.2 3,639,204 - PGA1_c34670 0.29 +0.4 3,639,212 - PGA1_c34670 0.30 +0.2 3,639,217 - PGA1_c34670 0.30 +0.1 3,639,250 + PGA1_c34670 0.34 +0.2 3,639,250 + PGA1_c34670 0.34 +0.4 3,639,251 + PGA1_c34670 0.34 -0.5 3,639,269 + PGA1_c34670 0.35 +0.4 3,639,279 + PGA1_c34670 0.36 +0.1 3,639,279 + PGA1_c34670 0.36 +0.3 3,639,284 + PGA1_c34670 0.37 +0.6 3,639,405 + PGA1_c34670 0.49 +0.0 3,639,438 + PGA1_c34670 0.53 -0.7 3,639,438 - PGA1_c34670 0.53 +0.6 3,639,438 - PGA1_c34670 0.53 +0.3 3,639,464 + PGA1_c34670 0.55 +0.2 3,639,497 + PGA1_c34670 0.59 +1.4 3,639,514 - PGA1_c34670 0.60 +0.5 3,639,514 - PGA1_c34670 0.60 +0.5 3,639,514 - PGA1_c34670 0.60 -0.1 3,639,549 + PGA1_c34670 0.64 -0.6 3,639,618 + PGA1_c34670 0.71 +0.4 3,639,618 - PGA1_c34670 0.71 -0.7 3,639,636 - PGA1_c34670 0.73 -0.1 3,639,643 - PGA1_c34670 0.74 +1.0 3,639,645 + PGA1_c34670 0.74 +1.8 3,639,679 + PGA1_c34670 0.77 +1.1 3,639,679 + PGA1_c34670 0.77 +1.0 3,639,679 + PGA1_c34670 0.77 +0.2 3,639,687 - PGA1_c34670 0.78 +0.9 3,639,695 - PGA1_c34670 0.79 +0.7 3,639,745 - PGA1_c34670 0.84 +0.3 3,639,763 - PGA1_c34670 0.86 -0.4 3,639,768 + PGA1_c34670 0.86 +0.8 3,639,768 - PGA1_c34670 0.86 -0.6 3,639,768 - PGA1_c34670 0.86 -0.2 3,639,798 - PGA1_c34670 0.89 +1.7 3,639,809 + +0.6 3,639,819 + -0.3 3,639,835 + +0.6 3,639,835 + -0.3 3,639,835 + +0.2 3,639,843 - +0.6 3,639,843 - +1.4 3,639,863 + +0.8 3,639,863 + +1.1 3,639,863 + +0.1 3,639,863 + -0.2 3,639,864 - +0.3 3,639,871 - -0.2 3,639,871 - +0.9 3,639,901 + -0.3 3,639,907 + +0.2 3,639,912 + -0.1 3,639,912 + +0.4 3,639,920 - +0.8 3,639,920 - -0.2 3,639,925 - +0.7 3,640,718 + -0.7 3,640,718 + +2.0 3,640,726 - +0.3 3,640,726 - -0.4 3,640,726 - +1.6 3,640,734 - -0.2 3,640,795 + -0.1 3,640,804 + +0.5 3,640,804 - -0.6 3,640,812 - +0.7 3,640,836 - -0.2 3,640,839 - -0.3 3,640,845 - -1.2 3,640,850 - +0.6 3,640,852 + -0.9 3,640,860 - -0.5 3,640,873 - -2.1
Or see this region's nucleotide sequence