Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c29440

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c29420 and PGA1_c29430 overlap by 1 nucleotidesPGA1_c29430 and PGA1_c29440 are separated by 139 nucleotidesPGA1_c29440 and PGA1_c29450 are separated by 220 nucleotidesPGA1_c29450 and PGA1_c29460 are separated by 64 nucleotides PGA1_c29420: PGA1_c29420 - aromatic-amino-acid transaminase [EC:2.6.1.57] (from data), at 3,076,250 to 3,077,434 _c29420 PGA1_c29430: PGA1_c29430 - 3-mercaptopyruvate sulfurtransferase, at 3,077,434 to 3,078,285 _c29430 PGA1_c29440: PGA1_c29440 - hypothetical protein, at 3,078,425 to 3,078,991 _c29440 PGA1_c29450: PGA1_c29450 - SsrA-binding protein SmpB, at 3,079,212 to 3,079,688 _c29450 PGA1_c29460: PGA1_c29460 - putative integral membrane protein, at 3,079,753 to 3,080,616 _c29460 Position (kb) 3078 3079Strain fitness (log2 ratio) -2 -1 0 1at 3077.608 kb on - strand, within PGA1_c29430at 3077.655 kb on - strand, within PGA1_c29430at 3077.798 kb on + strand, within PGA1_c29430at 3077.924 kb on + strand, within PGA1_c29430at 3078.299 kb on + strandat 3078.307 kb on + strandat 3078.307 kb on - strandat 3078.319 kb on + strandat 3078.374 kb on - strandat 3078.412 kb on + strandat 3078.420 kb on - strandat 3078.524 kb on + strand, within PGA1_c29440at 3078.527 kb on - strand, within PGA1_c29440at 3078.554 kb on + strand, within PGA1_c29440at 3078.574 kb on - strand, within PGA1_c29440at 3078.654 kb on - strand, within PGA1_c29440at 3078.691 kb on + strand, within PGA1_c29440at 3078.691 kb on + strand, within PGA1_c29440at 3078.693 kb on + strand, within PGA1_c29440at 3078.701 kb on + strand, within PGA1_c29440at 3078.701 kb on - strand, within PGA1_c29440at 3078.726 kb on - strand, within PGA1_c29440at 3078.735 kb on + strand, within PGA1_c29440at 3078.735 kb on + strand, within PGA1_c29440at 3078.735 kb on + strand, within PGA1_c29440at 3078.739 kb on - strand, within PGA1_c29440at 3078.743 kb on - strand, within PGA1_c29440at 3078.743 kb on - strand, within PGA1_c29440at 3078.745 kb on + strand, within PGA1_c29440at 3078.805 kb on - strand, within PGA1_c29440at 3078.829 kb on - strand, within PGA1_c29440at 3078.891 kb on + strand, within PGA1_c29440at 3078.961 kb on + strandat 3078.976 kb on - strandat 3079.043 kb on + strandat 3079.125 kb on + strandat 3079.185 kb on + strandat 3079.193 kb on - strandat 3079.215 kb on + strandat 3079.218 kb on - strandat 3079.247 kb on - strandat 3079.692 kb on - strandat 3079.785 kb on + strandat 3079.908 kb on - strand, within PGA1_c29460at 3079.937 kb on + strand, within PGA1_c29460at 3079.937 kb on + strand, within PGA1_c29460at 3079.964 kb on + strand, within PGA1_c29460at 3079.964 kb on + strand, within PGA1_c29460at 3079.983 kb on - strand, within PGA1_c29460

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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3,077,608 - PGA1_c29430 0.20 +0.4
3,077,655 - PGA1_c29430 0.26 +0.3
3,077,798 + PGA1_c29430 0.43 -1.6
3,077,924 + PGA1_c29430 0.58 -0.3
3,078,299 + -0.8
3,078,307 + -0.6
3,078,307 - -2.5
3,078,319 + -2.2
3,078,374 - -0.3
3,078,412 + +0.0
3,078,420 - +1.2
3,078,524 + PGA1_c29440 0.17 +0.4
3,078,527 - PGA1_c29440 0.18 -0.6
3,078,554 + PGA1_c29440 0.23 +0.5
3,078,574 - PGA1_c29440 0.26 -0.2
3,078,654 - PGA1_c29440 0.40 -0.8
3,078,691 + PGA1_c29440 0.47 +0.8
3,078,691 + PGA1_c29440 0.47 +1.5
3,078,693 + PGA1_c29440 0.47 +1.5
3,078,701 + PGA1_c29440 0.49 +0.8
3,078,701 - PGA1_c29440 0.49 +0.1
3,078,726 - PGA1_c29440 0.53 +0.9
3,078,735 + PGA1_c29440 0.55 +0.7
3,078,735 + PGA1_c29440 0.55 -0.1
3,078,735 + PGA1_c29440 0.55 -0.6
3,078,739 - PGA1_c29440 0.55 -0.1
3,078,743 - PGA1_c29440 0.56 +0.9
3,078,743 - PGA1_c29440 0.56 +0.1
3,078,745 + PGA1_c29440 0.56 -1.1
3,078,805 - PGA1_c29440 0.67 -0.1
3,078,829 - PGA1_c29440 0.71 +0.2
3,078,891 + PGA1_c29440 0.82 +1.0
3,078,961 + +0.1
3,078,976 - +0.9
3,079,043 + +0.2
3,079,125 + +0.1
3,079,185 + +0.9
3,079,193 - -1.1
3,079,215 + -0.0
3,079,218 - -1.5
3,079,247 - -0.1
3,079,692 - -0.2
3,079,785 + +0.3
3,079,908 - PGA1_c29460 0.18 -0.5
3,079,937 + PGA1_c29460 0.21 +0.3
3,079,937 + PGA1_c29460 0.21 -1.1
3,079,964 + PGA1_c29460 0.24 -0.1
3,079,964 + PGA1_c29460 0.24 -0.1
3,079,983 - PGA1_c29460 0.27 -1.6

Or see this region's nucleotide sequence