Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c24680

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c24670 and PGA1_c24680 are separated by 61 nucleotidesPGA1_c24680 and PGA1_c24690 overlap by 4 nucleotidesPGA1_c24690 and PGA1_c24700 overlap by 8 nucleotides PGA1_c24670: PGA1_c24670 - thymidine kinase Tdk, at 2,574,465 to 2,575,064 _c24670 PGA1_c24680: PGA1_c24680 - glyoxylate reductase GyaR, at 2,575,126 to 2,576,082 _c24680 PGA1_c24690: PGA1_c24690 - protein CsaA-like protein, at 2,576,079 to 2,576,417 _c24690 PGA1_c24700: PGA1_c24700 - pyrroline-5-carboxylate reductase ProC, at 2,576,410 to 2,577,237 _c24700 Position (kb) 2575 2576 2577Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2574.143 kb on - strandat 2574.167 kb on + strandat 2574.173 kb on + strandat 2574.173 kb on + strandat 2574.173 kb on + strandat 2574.181 kb on - strandat 2574.181 kb on - strandat 2574.181 kb on - strandat 2574.198 kb on + strandat 2574.198 kb on + strandat 2574.199 kb on + strandat 2574.199 kb on - strandat 2574.200 kb on + strandat 2574.200 kb on + strandat 2574.200 kb on + strandat 2574.200 kb on + strandat 2574.200 kb on + strandat 2574.200 kb on - strandat 2574.200 kb on - strandat 2574.206 kb on - strandat 2574.207 kb on - strandat 2574.207 kb on - strandat 2574.207 kb on - strandat 2574.208 kb on - strandat 2574.208 kb on - strandat 2574.208 kb on - strandat 2574.208 kb on - strandat 2574.208 kb on - strandat 2574.208 kb on - strandat 2574.208 kb on - strandat 2574.210 kb on + strandat 2574.211 kb on + strandat 2574.211 kb on + strandat 2574.211 kb on + strandat 2574.211 kb on + strandat 2574.211 kb on + strandat 2574.211 kb on + strandat 2574.211 kb on + strandat 2574.211 kb on + strandat 2574.211 kb on + strandat 2574.211 kb on + strandat 2574.216 kb on + strandat 2574.216 kb on + strandat 2574.219 kb on - strandat 2574.219 kb on - strandat 2574.219 kb on - strandat 2574.219 kb on - strandat 2574.219 kb on - strandat 2574.219 kb on - strandat 2574.219 kb on - strandat 2574.219 kb on - strandat 2574.221 kb on + strandat 2574.224 kb on - strandat 2574.226 kb on - strandat 2574.235 kb on + strandat 2574.237 kb on + strandat 2574.243 kb on - strandat 2574.245 kb on - strandat 2574.255 kb on + strandat 2574.256 kb on + strandat 2574.328 kb on + strandat 2574.338 kb on + strandat 2574.361 kb on + strandat 2574.362 kb on + strandat 2574.369 kb on - strandat 2574.414 kb on - strandat 2574.446 kb on - strandat 2574.458 kb on - strandat 2574.493 kb on - strandat 2574.521 kb on + strandat 2574.540 kb on - strand, within PGA1_c24670at 2574.546 kb on - strand, within PGA1_c24670at 2574.550 kb on + strand, within PGA1_c24670at 2574.562 kb on + strand, within PGA1_c24670at 2574.562 kb on + strand, within PGA1_c24670at 2574.562 kb on + strand, within PGA1_c24670at 2574.562 kb on + strand, within PGA1_c24670at 2574.562 kb on + strand, within PGA1_c24670at 2574.564 kb on + strand, within PGA1_c24670at 2574.570 kb on - strand, within PGA1_c24670at 2574.570 kb on - strand, within PGA1_c24670at 2574.597 kb on + strand, within PGA1_c24670at 2574.597 kb on + strand, within PGA1_c24670at 2574.597 kb on + strand, within PGA1_c24670at 2574.602 kb on + strand, within PGA1_c24670at 2574.605 kb on - strand, within PGA1_c24670at 2574.605 kb on - strand, within PGA1_c24670at 2574.605 kb on - strand, within PGA1_c24670at 2574.642 kb on + strand, within PGA1_c24670at 2574.674 kb on + strand, within PGA1_c24670at 2574.698 kb on + strand, within PGA1_c24670at 2574.698 kb on + strand, within PGA1_c24670at 2574.742 kb on - strand, within PGA1_c24670at 2574.752 kb on + strand, within PGA1_c24670at 2574.760 kb on - strand, within PGA1_c24670at 2574.800 kb on + strand, within PGA1_c24670at 2574.800 kb on + strand, within PGA1_c24670at 2574.800 kb on + strand, within PGA1_c24670at 2574.844 kb on - strand, within PGA1_c24670at 2574.844 kb on - strand, within PGA1_c24670at 2574.947 kb on - strand, within PGA1_c24670at 2574.964 kb on + strand, within PGA1_c24670at 2575.028 kb on + strandat 2575.036 kb on - strandat 2575.062 kb on - strandat 2575.073 kb on + strandat 2575.076 kb on - strandat 2575.133 kb on + strandat 2575.214 kb on - strandat 2575.225 kb on - strand, within PGA1_c24680at 2575.296 kb on + strand, within PGA1_c24680at 2575.296 kb on - strand, within PGA1_c24680at 2575.323 kb on - strand, within PGA1_c24680at 2575.332 kb on - strand, within PGA1_c24680at 2575.354 kb on + strand, within PGA1_c24680at 2575.426 kb on + strand, within PGA1_c24680at 2575.465 kb on + strand, within PGA1_c24680at 2575.473 kb on + strand, within PGA1_c24680at 2575.481 kb on - strand, within PGA1_c24680at 2575.481 kb on - strand, within PGA1_c24680at 2575.597 kb on + strand, within PGA1_c24680at 2575.650 kb on - strand, within PGA1_c24680at 2575.719 kb on - strand, within PGA1_c24680at 2575.796 kb on - strand, within PGA1_c24680at 2575.847 kb on - strand, within PGA1_c24680at 2575.873 kb on + strand, within PGA1_c24680at 2575.881 kb on - strand, within PGA1_c24680at 2575.890 kb on + strand, within PGA1_c24680at 2576.048 kb on + strandat 2576.102 kb on + strandat 2576.107 kb on + strandat 2576.110 kb on - strandat 2576.110 kb on - strandat 2576.110 kb on - strandat 2576.115 kb on - strand, within PGA1_c24690at 2576.115 kb on - strand, within PGA1_c24690at 2576.115 kb on - strand, within PGA1_c24690at 2576.115 kb on - strand, within PGA1_c24690at 2576.115 kb on - strand, within PGA1_c24690at 2576.147 kb on - strand, within PGA1_c24690at 2576.215 kb on + strand, within PGA1_c24690at 2576.222 kb on + strand, within PGA1_c24690at 2576.223 kb on - strand, within PGA1_c24690at 2576.248 kb on + strand, within PGA1_c24690at 2576.257 kb on + strand, within PGA1_c24690at 2576.257 kb on + strand, within PGA1_c24690at 2576.257 kb on + strand, within PGA1_c24690at 2576.257 kb on + strand, within PGA1_c24690at 2576.257 kb on + strand, within PGA1_c24690at 2576.257 kb on + strand, within PGA1_c24690at 2576.257 kb on + strand, within PGA1_c24690at 2576.265 kb on - strand, within PGA1_c24690at 2576.265 kb on - strand, within PGA1_c24690at 2576.265 kb on - strand, within PGA1_c24690at 2576.275 kb on - strand, within PGA1_c24690at 2576.308 kb on + strand, within PGA1_c24690at 2576.321 kb on - strand, within PGA1_c24690at 2576.326 kb on + strand, within PGA1_c24690at 2576.341 kb on + strand, within PGA1_c24690at 2576.344 kb on - strand, within PGA1_c24690at 2576.344 kb on - strand, within PGA1_c24690at 2576.344 kb on - strand, within PGA1_c24690at 2576.346 kb on + strand, within PGA1_c24690at 2576.349 kb on - strand, within PGA1_c24690at 2576.354 kb on - strand, within PGA1_c24690at 2576.384 kb on - strandat 2576.384 kb on - strandat 2576.401 kb on + strandat 2576.502 kb on + strand, within PGA1_c24700at 2576.517 kb on + strand, within PGA1_c24700at 2576.525 kb on - strand, within PGA1_c24700at 2576.525 kb on - strand, within PGA1_c24700at 2576.526 kb on + strand, within PGA1_c24700at 2576.536 kb on + strand, within PGA1_c24700at 2576.556 kb on + strand, within PGA1_c24700at 2576.561 kb on - strand, within PGA1_c24700at 2576.564 kb on - strand, within PGA1_c24700at 2576.569 kb on - strand, within PGA1_c24700at 2576.652 kb on - strand, within PGA1_c24700at 2576.708 kb on - strand, within PGA1_c24700at 2576.752 kb on - strand, within PGA1_c24700at 2576.767 kb on - strand, within PGA1_c24700at 2576.907 kb on + strand, within PGA1_c24700at 2576.976 kb on - strand, within PGA1_c24700at 2576.988 kb on + strand, within PGA1_c24700at 2577.007 kb on - strand, within PGA1_c24700

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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2,574,143 - +0.3
2,574,167 + -0.9
2,574,173 + +0.8
2,574,173 + +0.4
2,574,173 + +0.6
2,574,181 - -0.4
2,574,181 - +0.5
2,574,181 - -0.7
2,574,198 + +0.4
2,574,198 + -0.1
2,574,199 + +0.1
2,574,199 - -2.0
2,574,200 + +0.6
2,574,200 + +0.4
2,574,200 + +0.8
2,574,200 + +0.5
2,574,200 + -0.2
2,574,200 - -0.4
2,574,200 - +0.6
2,574,206 - +0.2
2,574,207 - +0.3
2,574,207 - +0.8
2,574,207 - -0.1
2,574,208 - +0.5
2,574,208 - +0.5
2,574,208 - +0.0
2,574,208 - -0.7
2,574,208 - -0.5
2,574,208 - -0.1
2,574,208 - +0.3
2,574,210 + -1.4
2,574,211 + +0.2
2,574,211 + +0.3
2,574,211 + +0.2
2,574,211 + +0.4
2,574,211 + -1.3
2,574,211 + +0.9
2,574,211 + -0.5
2,574,211 + -0.1
2,574,211 + -0.1
2,574,211 + +1.1
2,574,216 + +0.5
2,574,216 + +0.4
2,574,219 - -0.4
2,574,219 - +1.5
2,574,219 - +0.3
2,574,219 - +1.0
2,574,219 - -0.8
2,574,219 - +0.1
2,574,219 - +0.9
2,574,219 - -0.1
2,574,221 + +0.3
2,574,224 - +0.7
2,574,226 - +0.2
2,574,235 + +0.8
2,574,237 + +0.5
2,574,243 - -0.7
2,574,245 - -0.2
2,574,255 + +1.0
2,574,256 + -0.4
2,574,328 + -1.3
2,574,338 + +0.2
2,574,361 + +0.3
2,574,362 + +0.0
2,574,369 - -0.1
2,574,414 - -0.5
2,574,446 - -1.1
2,574,458 - +1.0
2,574,493 - +0.9
2,574,521 + -0.5
2,574,540 - PGA1_c24670 0.12 -0.5
2,574,546 - PGA1_c24670 0.14 +0.2
2,574,550 + PGA1_c24670 0.14 -0.0
2,574,562 + PGA1_c24670 0.16 -0.0
2,574,562 + PGA1_c24670 0.16 +1.8
2,574,562 + PGA1_c24670 0.16 +0.6
2,574,562 + PGA1_c24670 0.16 +0.6
2,574,562 + PGA1_c24670 0.16 +0.1
2,574,564 + PGA1_c24670 0.17 -0.1
2,574,570 - PGA1_c24670 0.17 -0.3
2,574,570 - PGA1_c24670 0.17 +0.8
2,574,597 + PGA1_c24670 0.22 -0.3
2,574,597 + PGA1_c24670 0.22 +0.1
2,574,597 + PGA1_c24670 0.22 +0.1
2,574,602 + PGA1_c24670 0.23 -0.5
2,574,605 - PGA1_c24670 0.23 +1.5
2,574,605 - PGA1_c24670 0.23 +0.7
2,574,605 - PGA1_c24670 0.23 +1.1
2,574,642 + PGA1_c24670 0.29 +0.0
2,574,674 + PGA1_c24670 0.35 +0.1
2,574,698 + PGA1_c24670 0.39 +0.4
2,574,698 + PGA1_c24670 0.39 +0.7
2,574,742 - PGA1_c24670 0.46 +0.6
2,574,752 + PGA1_c24670 0.48 -0.2
2,574,760 - PGA1_c24670 0.49 -0.5
2,574,800 + PGA1_c24670 0.56 +0.5
2,574,800 + PGA1_c24670 0.56 +0.6
2,574,800 + PGA1_c24670 0.56 -0.4
2,574,844 - PGA1_c24670 0.63 +0.5
2,574,844 - PGA1_c24670 0.63 +0.4
2,574,947 - PGA1_c24670 0.80 +0.2
2,574,964 + PGA1_c24670 0.83 -0.2
2,575,028 + +0.7
2,575,036 - +0.9
2,575,062 - -0.8
2,575,073 + +0.3
2,575,076 - +0.4
2,575,133 + +0.9
2,575,214 - +0.6
2,575,225 - PGA1_c24680 0.10 +0.5
2,575,296 + PGA1_c24680 0.18 +0.7
2,575,296 - PGA1_c24680 0.18 +0.3
2,575,323 - PGA1_c24680 0.21 +1.5
2,575,332 - PGA1_c24680 0.22 +0.9
2,575,354 + PGA1_c24680 0.24 +0.6
2,575,426 + PGA1_c24680 0.31 +0.1
2,575,465 + PGA1_c24680 0.35 +0.8
2,575,473 + PGA1_c24680 0.36 +0.3
2,575,481 - PGA1_c24680 0.37 +1.2
2,575,481 - PGA1_c24680 0.37 -0.7
2,575,597 + PGA1_c24680 0.49 +0.1
2,575,650 - PGA1_c24680 0.55 -0.9
2,575,719 - PGA1_c24680 0.62 +0.4
2,575,796 - PGA1_c24680 0.70 +0.4
2,575,847 - PGA1_c24680 0.75 +0.5
2,575,873 + PGA1_c24680 0.78 +0.4
2,575,881 - PGA1_c24680 0.79 -0.2
2,575,890 + PGA1_c24680 0.80 -0.0
2,576,048 + -0.1
2,576,102 + -0.1
2,576,107 + -0.4
2,576,110 - -0.6
2,576,110 - +0.0
2,576,110 - +1.0
2,576,115 - PGA1_c24690 0.11 -1.0
2,576,115 - PGA1_c24690 0.11 -0.5
2,576,115 - PGA1_c24690 0.11 +0.5
2,576,115 - PGA1_c24690 0.11 -0.5
2,576,115 - PGA1_c24690 0.11 -0.5
2,576,147 - PGA1_c24690 0.20 +0.1
2,576,215 + PGA1_c24690 0.40 +0.2
2,576,222 + PGA1_c24690 0.42 +0.5
2,576,223 - PGA1_c24690 0.42 +0.7
2,576,248 + PGA1_c24690 0.50 +1.0
2,576,257 + PGA1_c24690 0.53 -1.5
2,576,257 + PGA1_c24690 0.53 +1.1
2,576,257 + PGA1_c24690 0.53 +2.2
2,576,257 + PGA1_c24690 0.53 +0.2
2,576,257 + PGA1_c24690 0.53 +0.8
2,576,257 + PGA1_c24690 0.53 +0.7
2,576,257 + PGA1_c24690 0.53 +0.4
2,576,265 - PGA1_c24690 0.55 -0.3
2,576,265 - PGA1_c24690 0.55 -1.3
2,576,265 - PGA1_c24690 0.55 +0.8
2,576,275 - PGA1_c24690 0.58 -0.2
2,576,308 + PGA1_c24690 0.68 -0.8
2,576,321 - PGA1_c24690 0.71 -2.0
2,576,326 + PGA1_c24690 0.73 +0.3
2,576,341 + PGA1_c24690 0.77 -0.5
2,576,344 - PGA1_c24690 0.78 +0.4
2,576,344 - PGA1_c24690 0.78 -0.1
2,576,344 - PGA1_c24690 0.78 -0.2
2,576,346 + PGA1_c24690 0.79 +0.6
2,576,349 - PGA1_c24690 0.80 +0.1
2,576,354 - PGA1_c24690 0.81 +0.5
2,576,384 - +0.7
2,576,384 - -1.2
2,576,401 + -0.6
2,576,502 + PGA1_c24700 0.11 -2.9
2,576,517 + PGA1_c24700 0.13 -1.7
2,576,525 - PGA1_c24700 0.14 -3.0
2,576,525 - PGA1_c24700 0.14 -1.3
2,576,526 + PGA1_c24700 0.14 -2.6
2,576,536 + PGA1_c24700 0.15 -2.9
2,576,556 + PGA1_c24700 0.18 -3.3
2,576,561 - PGA1_c24700 0.18 -2.2
2,576,564 - PGA1_c24700 0.19 -2.3
2,576,569 - PGA1_c24700 0.19 -1.8
2,576,652 - PGA1_c24700 0.29 -2.4
2,576,708 - PGA1_c24700 0.36 -2.2
2,576,752 - PGA1_c24700 0.41 -2.1
2,576,767 - PGA1_c24700 0.43 -1.9
2,576,907 + PGA1_c24700 0.60 -1.8
2,576,976 - PGA1_c24700 0.68 -3.0
2,576,988 + PGA1_c24700 0.70 -3.1
2,577,007 - PGA1_c24700 0.72 -2.7

Or see this region's nucleotide sequence