Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c19680 and PGA1_c19690 are separated by 112 nucleotides PGA1_c19690 and PGA1_c19700 are separated by 121 nucleotides
PGA1_c19680: PGA1_c19680 - putative transcriptional regulator, crp family, at 2,043,317 to 2,043,985
_c19680
PGA1_c19690: PGA1_c19690 - Protein of unknown function (DUF2892)., at 2,044,098 to 2,044,310
_c19690
PGA1_c19700: PGA1_c19700 - sulfate transporter, at 2,044,432 to 2,046,186
_c19700
Position (kb)
2044
2045 Strain fitness (log2 ratio)
-2
-1
0
1 at 2043.114 kb on - strand at 2043.118 kb on + strand at 2043.131 kb on - strand at 2043.167 kb on - strand at 2043.179 kb on + strand at 2043.179 kb on + strand at 2043.179 kb on + strand at 2043.187 kb on - strand at 2043.187 kb on - strand at 2043.240 kb on - strand at 2043.242 kb on + strand at 2043.247 kb on + strand at 2043.250 kb on - strand at 2043.253 kb on + strand at 2043.258 kb on + strand at 2043.273 kb on + strand at 2043.291 kb on + strand at 2043.356 kb on + strand at 2043.364 kb on - strand at 2043.514 kb on - strand, within PGA1_c19680 at 2043.551 kb on + strand, within PGA1_c19680 at 2043.558 kb on + strand, within PGA1_c19680 at 2043.559 kb on - strand, within PGA1_c19680 at 2043.566 kb on - strand, within PGA1_c19680 at 2043.581 kb on - strand, within PGA1_c19680 at 2043.612 kb on + strand, within PGA1_c19680 at 2043.774 kb on + strand, within PGA1_c19680 at 2043.793 kb on - strand, within PGA1_c19680 at 2043.805 kb on + strand, within PGA1_c19680 at 2043.842 kb on - strand, within PGA1_c19680 at 2043.854 kb on + strand, within PGA1_c19680 at 2043.854 kb on + strand, within PGA1_c19680 at 2043.862 kb on - strand, within PGA1_c19680 at 2043.867 kb on + strand, within PGA1_c19680 at 2043.873 kb on + strand, within PGA1_c19680 at 2043.920 kb on - strand at 2043.987 kb on - strand at 2044.067 kb on + strand at 2044.147 kb on + strand, within PGA1_c19690 at 2044.147 kb on + strand, within PGA1_c19690 at 2044.152 kb on + strand, within PGA1_c19690 at 2044.154 kb on + strand, within PGA1_c19690 at 2044.155 kb on - strand, within PGA1_c19690 at 2044.155 kb on - strand, within PGA1_c19690 at 2044.155 kb on - strand, within PGA1_c19690 at 2044.217 kb on - strand, within PGA1_c19690 at 2044.233 kb on - strand, within PGA1_c19690 at 2044.256 kb on + strand, within PGA1_c19690 at 2044.342 kb on - strand at 2044.385 kb on - strand at 2044.395 kb on + strand at 2044.395 kb on + strand at 2044.403 kb on - strand at 2044.413 kb on - strand at 2044.435 kb on - strand at 2044.441 kb on + strand at 2044.441 kb on + strand at 2044.444 kb on - strand at 2044.449 kb on - strand at 2044.449 kb on - strand at 2044.449 kb on - strand at 2044.449 kb on - strand at 2044.449 kb on - strand at 2044.449 kb on - strand at 2044.462 kb on + strand at 2044.470 kb on - strand at 2044.480 kb on + strand at 2044.490 kb on + strand at 2044.495 kb on + strand at 2044.702 kb on - strand, within PGA1_c19700 at 2044.846 kb on + strand, within PGA1_c19700 at 2044.862 kb on + strand, within PGA1_c19700 at 2044.895 kb on - strand, within PGA1_c19700 at 2044.905 kb on + strand, within PGA1_c19700 at 2044.910 kb on + strand, within PGA1_c19700 at 2044.910 kb on + strand, within PGA1_c19700 at 2044.913 kb on - strand, within PGA1_c19700 at 2044.918 kb on - strand, within PGA1_c19700 at 2044.918 kb on - strand, within PGA1_c19700 at 2044.919 kb on + strand, within PGA1_c19700 at 2044.919 kb on + strand, within PGA1_c19700 at 2044.927 kb on - strand at 2044.989 kb on + strand, within PGA1_c19700 at 2045.008 kb on - strand, within PGA1_c19700 at 2045.029 kb on - strand, within PGA1_c19700 at 2045.200 kb on + strand, within PGA1_c19700 at 2045.226 kb on + strand, within PGA1_c19700 at 2045.255 kb on - strand, within PGA1_c19700 at 2045.299 kb on + strand, within PGA1_c19700 at 2045.307 kb on - strand, within PGA1_c19700
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (N) remove 2,043,114 - -0.7 2,043,118 + -1.9 2,043,131 - -1.8 2,043,167 - -0.4 2,043,179 + -0.3 2,043,179 + -0.1 2,043,179 + +0.3 2,043,187 - +1.3 2,043,187 - +0.3 2,043,240 - +0.5 2,043,242 + +1.1 2,043,247 + +0.1 2,043,250 - -0.4 2,043,253 + -0.2 2,043,258 + +0.2 2,043,273 + -0.2 2,043,291 + -1.1 2,043,356 + -0.9 2,043,364 - +0.3 2,043,514 - PGA1_c19680 0.29 -1.6 2,043,551 + PGA1_c19680 0.35 -0.7 2,043,558 + PGA1_c19680 0.36 +0.8 2,043,559 - PGA1_c19680 0.36 -1.9 2,043,566 - PGA1_c19680 0.37 +0.5 2,043,581 - PGA1_c19680 0.39 +0.1 2,043,612 + PGA1_c19680 0.44 -0.3 2,043,774 + PGA1_c19680 0.68 +0.4 2,043,793 - PGA1_c19680 0.71 +0.2 2,043,805 + PGA1_c19680 0.73 -0.9 2,043,842 - PGA1_c19680 0.78 +0.3 2,043,854 + PGA1_c19680 0.80 -0.9 2,043,854 + PGA1_c19680 0.80 -0.5 2,043,862 - PGA1_c19680 0.81 +0.1 2,043,867 + PGA1_c19680 0.82 +0.3 2,043,873 + PGA1_c19680 0.83 -1.7 2,043,920 - +0.4 2,043,987 - +0.4 2,044,067 + +0.3 2,044,147 + PGA1_c19690 0.23 -0.9 2,044,147 + PGA1_c19690 0.23 -1.3 2,044,152 + PGA1_c19690 0.25 -0.5 2,044,154 + PGA1_c19690 0.26 -0.2 2,044,155 - PGA1_c19690 0.27 -0.1 2,044,155 - PGA1_c19690 0.27 -2.2 2,044,155 - PGA1_c19690 0.27 -1.5 2,044,217 - PGA1_c19690 0.56 -0.3 2,044,233 - PGA1_c19690 0.63 +1.7 2,044,256 + PGA1_c19690 0.74 -0.3 2,044,342 - +0.3 2,044,385 - -0.6 2,044,395 + -0.7 2,044,395 + -0.5 2,044,403 - -0.5 2,044,413 - +0.3 2,044,435 - +0.3 2,044,441 + +0.3 2,044,441 + -1.0 2,044,444 - +0.7 2,044,449 - -0.5 2,044,449 - -0.3 2,044,449 - -0.9 2,044,449 - +1.3 2,044,449 - +0.6 2,044,449 - -0.3 2,044,462 + +0.2 2,044,470 - +0.1 2,044,480 + -0.0 2,044,490 + +1.3 2,044,495 + -0.2 2,044,702 - PGA1_c19700 0.15 +0.8 2,044,846 + PGA1_c19700 0.24 +1.5 2,044,862 + PGA1_c19700 0.25 -0.7 2,044,895 - PGA1_c19700 0.26 +0.4 2,044,905 + PGA1_c19700 0.27 +0.6 2,044,910 + PGA1_c19700 0.27 +0.5 2,044,910 + PGA1_c19700 0.27 +1.5 2,044,913 - PGA1_c19700 0.27 +1.5 2,044,918 - PGA1_c19700 0.28 -0.5 2,044,918 - PGA1_c19700 0.28 -1.7 2,044,919 + PGA1_c19700 0.28 -0.1 2,044,919 + PGA1_c19700 0.28 -0.5 2,044,927 - +1.3 2,044,989 + PGA1_c19700 0.32 -1.1 2,045,008 - PGA1_c19700 0.33 +0.3 2,045,029 - PGA1_c19700 0.34 -0.7 2,045,200 + PGA1_c19700 0.44 -0.4 2,045,226 + PGA1_c19700 0.45 +0.0 2,045,255 - PGA1_c19700 0.47 -0.4 2,045,299 + PGA1_c19700 0.49 +0.4 2,045,307 - PGA1_c19700 0.50 +0.1
Or see this region's nucleotide sequence