Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c15710

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c15690 and PGA1_c15700 are separated by 124 nucleotidesPGA1_c15700 and PGA1_c15710 are separated by 356 nucleotidesPGA1_c15710 and PGA1_c15720 are separated by 102 nucleotides PGA1_c15690: PGA1_c15690 - short chain dehydrogenase / reductase, at 1,629,277 to 1,630,050 _c15690 PGA1_c15700: PGA1_c15700 - hypothetical protein, at 1,630,175 to 1,630,450 _c15700 PGA1_c15710: PGA1_c15710 - acyl-CoA dehydrogenase, at 1,630,807 to 1,632,027 _c15710 PGA1_c15720: PGA1_c15720 - putative glycine cleavage system transcriptional activator, at 1,632,130 to 1,633,041 _c15720 Position (kb) 1630 1631 1632 1633Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1629.852 kb on - strand, within PGA1_c15690at 1629.873 kb on - strand, within PGA1_c15690at 1629.884 kb on + strand, within PGA1_c15690at 1629.892 kb on - strand, within PGA1_c15690at 1629.921 kb on - strand, within PGA1_c15690at 1629.929 kb on + strand, within PGA1_c15690at 1629.934 kb on + strand, within PGA1_c15690at 1629.997 kb on + strandat 1630.072 kb on - strandat 1630.096 kb on + strandat 1630.096 kb on + strandat 1630.096 kb on + strandat 1630.096 kb on + strandat 1630.096 kb on + strandat 1630.104 kb on - strandat 1630.104 kb on - strandat 1630.104 kb on - strandat 1630.104 kb on - strandat 1630.104 kb on - strandat 1630.104 kb on - strandat 1630.104 kb on - strandat 1630.104 kb on - strandat 1630.104 kb on - strandat 1630.104 kb on - strandat 1630.104 kb on - strandat 1630.136 kb on + strandat 1630.274 kb on + strand, within PGA1_c15700at 1630.292 kb on + strand, within PGA1_c15700at 1630.301 kb on + strand, within PGA1_c15700at 1630.301 kb on + strand, within PGA1_c15700at 1630.311 kb on + strand, within PGA1_c15700at 1630.311 kb on + strand, within PGA1_c15700at 1630.311 kb on + strand, within PGA1_c15700at 1630.408 kb on + strand, within PGA1_c15700at 1630.408 kb on + strand, within PGA1_c15700at 1630.408 kb on + strand, within PGA1_c15700at 1630.408 kb on + strand, within PGA1_c15700at 1630.408 kb on + strand, within PGA1_c15700at 1630.408 kb on + strand, within PGA1_c15700at 1630.416 kb on - strand, within PGA1_c15700at 1630.416 kb on - strand, within PGA1_c15700at 1630.416 kb on - strand, within PGA1_c15700at 1630.416 kb on - strand, within PGA1_c15700at 1630.416 kb on - strand, within PGA1_c15700at 1630.416 kb on - strand, within PGA1_c15700at 1630.416 kb on - strand, within PGA1_c15700at 1630.419 kb on + strand, within PGA1_c15700at 1630.427 kb on - strandat 1630.473 kb on - strandat 1630.480 kb on + strandat 1630.486 kb on + strandat 1630.494 kb on - strandat 1630.515 kb on + strandat 1630.520 kb on + strandat 1630.520 kb on + strandat 1630.520 kb on + strandat 1630.520 kb on + strandat 1630.528 kb on - strandat 1630.543 kb on + strandat 1630.613 kb on + strandat 1630.745 kb on + strandat 1630.790 kb on + strandat 1630.795 kb on + strandat 1630.961 kb on - strand, within PGA1_c15710at 1630.983 kb on + strand, within PGA1_c15710at 1631.038 kb on - strand, within PGA1_c15710at 1631.038 kb on - strand, within PGA1_c15710at 1631.076 kb on + strand, within PGA1_c15710at 1631.137 kb on - strand, within PGA1_c15710at 1631.204 kb on - strand, within PGA1_c15710at 1631.377 kb on + strand, within PGA1_c15710at 1631.377 kb on + strand, within PGA1_c15710at 1631.393 kb on + strand, within PGA1_c15710at 1631.554 kb on + strand, within PGA1_c15710at 1631.589 kb on + strand, within PGA1_c15710at 1631.960 kb on + strandat 1631.985 kb on + strandat 1632.062 kb on + strandat 1632.063 kb on + strandat 1632.145 kb on - strandat 1632.242 kb on - strand, within PGA1_c15720at 1632.289 kb on + strand, within PGA1_c15720at 1632.347 kb on - strand, within PGA1_c15720at 1632.402 kb on + strand, within PGA1_c15720at 1632.422 kb on + strand, within PGA1_c15720at 1632.422 kb on + strand, within PGA1_c15720at 1632.446 kb on + strand, within PGA1_c15720at 1632.461 kb on + strand, within PGA1_c15720at 1632.525 kb on - strand, within PGA1_c15720at 1632.535 kb on - strand, within PGA1_c15720at 1632.550 kb on + strand, within PGA1_c15720at 1632.607 kb on + strand, within PGA1_c15720at 1632.680 kb on - strand, within PGA1_c15720at 1632.705 kb on - strand, within PGA1_c15720at 1632.726 kb on + strand, within PGA1_c15720at 1632.783 kb on + strand, within PGA1_c15720at 1632.844 kb on - strand, within PGA1_c15720at 1632.914 kb on - strand, within PGA1_c15720at 1632.935 kb on - strand, within PGA1_c15720at 1632.964 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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1,629,852 - PGA1_c15690 0.74 -0.2
1,629,873 - PGA1_c15690 0.77 +0.7
1,629,884 + PGA1_c15690 0.78 +1.2
1,629,892 - PGA1_c15690 0.79 -0.8
1,629,921 - PGA1_c15690 0.83 +0.2
1,629,929 + PGA1_c15690 0.84 -1.1
1,629,934 + PGA1_c15690 0.85 +0.3
1,629,997 + +1.4
1,630,072 - -0.1
1,630,096 + +0.4
1,630,096 + -0.7
1,630,096 + +2.2
1,630,096 + +0.1
1,630,096 + +0.1
1,630,104 - +0.0
1,630,104 - -0.1
1,630,104 - +1.2
1,630,104 - +0.9
1,630,104 - -0.4
1,630,104 - -0.9
1,630,104 - -0.6
1,630,104 - +1.1
1,630,104 - -1.2
1,630,104 - +0.7
1,630,104 - +1.0
1,630,136 + -0.7
1,630,274 + PGA1_c15700 0.36 -1.3
1,630,292 + PGA1_c15700 0.42 +1.1
1,630,301 + PGA1_c15700 0.46 -0.6
1,630,301 + PGA1_c15700 0.46 -0.0
1,630,311 + PGA1_c15700 0.49 +0.8
1,630,311 + PGA1_c15700 0.49 -1.1
1,630,311 + PGA1_c15700 0.49 -0.1
1,630,408 + PGA1_c15700 0.84 +0.2
1,630,408 + PGA1_c15700 0.84 -0.2
1,630,408 + PGA1_c15700 0.84 +0.3
1,630,408 + PGA1_c15700 0.84 +0.4
1,630,408 + PGA1_c15700 0.84 -0.1
1,630,408 + PGA1_c15700 0.84 -0.7
1,630,416 - PGA1_c15700 0.87 +0.6
1,630,416 - PGA1_c15700 0.87 -0.8
1,630,416 - PGA1_c15700 0.87 +0.4
1,630,416 - PGA1_c15700 0.87 +0.2
1,630,416 - PGA1_c15700 0.87 +1.1
1,630,416 - PGA1_c15700 0.87 -0.4
1,630,416 - PGA1_c15700 0.87 +0.3
1,630,419 + PGA1_c15700 0.88 -0.3
1,630,427 - +0.5
1,630,473 - +0.1
1,630,480 + +0.1
1,630,486 + +0.3
1,630,494 - +0.5
1,630,515 + +0.5
1,630,520 + +0.6
1,630,520 + -0.9
1,630,520 + -1.0
1,630,520 + +0.2
1,630,528 - +0.3
1,630,543 + -0.4
1,630,613 + +0.9
1,630,745 + -0.3
1,630,790 + -2.0
1,630,795 + +0.6
1,630,961 - PGA1_c15710 0.13 +0.2
1,630,983 + PGA1_c15710 0.14 -0.4
1,631,038 - PGA1_c15710 0.19 +1.1
1,631,038 - PGA1_c15710 0.19 +0.3
1,631,076 + PGA1_c15710 0.22 +0.6
1,631,137 - PGA1_c15710 0.27 +0.5
1,631,204 - PGA1_c15710 0.33 +1.0
1,631,377 + PGA1_c15710 0.47 +1.0
1,631,377 + PGA1_c15710 0.47 -0.5
1,631,393 + PGA1_c15710 0.48 +0.6
1,631,554 + PGA1_c15710 0.61 -2.8
1,631,589 + PGA1_c15710 0.64 -0.0
1,631,960 + +1.2
1,631,985 + +0.0
1,632,062 + -0.2
1,632,063 + -0.5
1,632,145 - -0.8
1,632,242 - PGA1_c15720 0.12 +0.7
1,632,289 + PGA1_c15720 0.17 -0.5
1,632,347 - PGA1_c15720 0.24 +0.4
1,632,402 + PGA1_c15720 0.30 +0.0
1,632,422 + PGA1_c15720 0.32 -1.1
1,632,422 + PGA1_c15720 0.32 -0.0
1,632,446 + PGA1_c15720 0.35 -1.0
1,632,461 + PGA1_c15720 0.36 -1.1
1,632,525 - PGA1_c15720 0.43 +1.2
1,632,535 - PGA1_c15720 0.44 -1.0
1,632,550 + PGA1_c15720 0.46 -0.1
1,632,607 + PGA1_c15720 0.52 +0.5
1,632,680 - PGA1_c15720 0.60 +0.3
1,632,705 - PGA1_c15720 0.63 +0.7
1,632,726 + PGA1_c15720 0.65 -0.7
1,632,783 + PGA1_c15720 0.72 +0.4
1,632,844 - PGA1_c15720 0.78 +0.2
1,632,914 - PGA1_c15720 0.86 +0.7
1,632,935 - PGA1_c15720 0.88 +0.6
1,632,964 + -1.2

Or see this region's nucleotide sequence