Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15690 and PGA1_c15700 are separated by 124 nucleotides PGA1_c15700 and PGA1_c15710 are separated by 356 nucleotides PGA1_c15710 and PGA1_c15720 are separated by 102 nucleotides
PGA1_c15690: PGA1_c15690 - short chain dehydrogenase / reductase, at 1,629,277 to 1,630,050
_c15690
PGA1_c15700: PGA1_c15700 - hypothetical protein, at 1,630,175 to 1,630,450
_c15700
PGA1_c15710: PGA1_c15710 - acyl-CoA dehydrogenase, at 1,630,807 to 1,632,027
_c15710
PGA1_c15720: PGA1_c15720 - putative glycine cleavage system transcriptional activator, at 1,632,130 to 1,633,041
_c15720
Position (kb)
1630
1631
1632
1633 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1629.852 kb on - strand, within PGA1_c15690 at 1629.873 kb on - strand, within PGA1_c15690 at 1629.884 kb on + strand, within PGA1_c15690 at 1629.892 kb on - strand, within PGA1_c15690 at 1629.921 kb on - strand, within PGA1_c15690 at 1629.929 kb on + strand, within PGA1_c15690 at 1629.934 kb on + strand, within PGA1_c15690 at 1629.997 kb on + strand at 1630.072 kb on - strand at 1630.096 kb on + strand at 1630.096 kb on + strand at 1630.096 kb on + strand at 1630.096 kb on + strand at 1630.096 kb on + strand at 1630.104 kb on - strand at 1630.104 kb on - strand at 1630.104 kb on - strand at 1630.104 kb on - strand at 1630.104 kb on - strand at 1630.104 kb on - strand at 1630.104 kb on - strand at 1630.104 kb on - strand at 1630.104 kb on - strand at 1630.104 kb on - strand at 1630.104 kb on - strand at 1630.136 kb on + strand at 1630.274 kb on + strand, within PGA1_c15700 at 1630.292 kb on + strand, within PGA1_c15700 at 1630.301 kb on + strand, within PGA1_c15700 at 1630.301 kb on + strand, within PGA1_c15700 at 1630.311 kb on + strand, within PGA1_c15700 at 1630.311 kb on + strand, within PGA1_c15700 at 1630.311 kb on + strand, within PGA1_c15700 at 1630.408 kb on + strand, within PGA1_c15700 at 1630.408 kb on + strand, within PGA1_c15700 at 1630.408 kb on + strand, within PGA1_c15700 at 1630.408 kb on + strand, within PGA1_c15700 at 1630.408 kb on + strand, within PGA1_c15700 at 1630.408 kb on + strand, within PGA1_c15700 at 1630.416 kb on - strand, within PGA1_c15700 at 1630.416 kb on - strand, within PGA1_c15700 at 1630.416 kb on - strand, within PGA1_c15700 at 1630.416 kb on - strand, within PGA1_c15700 at 1630.416 kb on - strand, within PGA1_c15700 at 1630.416 kb on - strand, within PGA1_c15700 at 1630.416 kb on - strand, within PGA1_c15700 at 1630.419 kb on + strand, within PGA1_c15700 at 1630.427 kb on - strand at 1630.473 kb on - strand at 1630.480 kb on + strand at 1630.486 kb on + strand at 1630.494 kb on - strand at 1630.515 kb on + strand at 1630.520 kb on + strand at 1630.520 kb on + strand at 1630.520 kb on + strand at 1630.520 kb on + strand at 1630.528 kb on - strand at 1630.543 kb on + strand at 1630.613 kb on + strand at 1630.745 kb on + strand at 1630.790 kb on + strand at 1630.795 kb on + strand at 1630.961 kb on - strand, within PGA1_c15710 at 1630.983 kb on + strand, within PGA1_c15710 at 1631.038 kb on - strand, within PGA1_c15710 at 1631.038 kb on - strand, within PGA1_c15710 at 1631.076 kb on + strand, within PGA1_c15710 at 1631.137 kb on - strand, within PGA1_c15710 at 1631.204 kb on - strand, within PGA1_c15710 at 1631.377 kb on + strand, within PGA1_c15710 at 1631.377 kb on + strand, within PGA1_c15710 at 1631.393 kb on + strand, within PGA1_c15710 at 1631.554 kb on + strand, within PGA1_c15710 at 1631.589 kb on + strand, within PGA1_c15710 at 1631.960 kb on + strand at 1631.985 kb on + strand at 1632.062 kb on + strand at 1632.063 kb on + strand at 1632.145 kb on - strand at 1632.242 kb on - strand, within PGA1_c15720 at 1632.289 kb on + strand, within PGA1_c15720 at 1632.347 kb on - strand, within PGA1_c15720 at 1632.402 kb on + strand, within PGA1_c15720 at 1632.422 kb on + strand, within PGA1_c15720 at 1632.422 kb on + strand, within PGA1_c15720 at 1632.446 kb on + strand, within PGA1_c15720 at 1632.461 kb on + strand, within PGA1_c15720 at 1632.525 kb on - strand, within PGA1_c15720 at 1632.535 kb on - strand, within PGA1_c15720 at 1632.550 kb on + strand, within PGA1_c15720 at 1632.607 kb on + strand, within PGA1_c15720 at 1632.680 kb on - strand, within PGA1_c15720 at 1632.705 kb on - strand, within PGA1_c15720 at 1632.726 kb on + strand, within PGA1_c15720 at 1632.783 kb on + strand, within PGA1_c15720 at 1632.844 kb on - strand, within PGA1_c15720 at 1632.914 kb on - strand, within PGA1_c15720 at 1632.935 kb on - strand, within PGA1_c15720 at 1632.964 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (N) remove 1,629,852 - PGA1_c15690 0.74 -0.2 1,629,873 - PGA1_c15690 0.77 +0.7 1,629,884 + PGA1_c15690 0.78 +1.2 1,629,892 - PGA1_c15690 0.79 -0.8 1,629,921 - PGA1_c15690 0.83 +0.2 1,629,929 + PGA1_c15690 0.84 -1.1 1,629,934 + PGA1_c15690 0.85 +0.3 1,629,997 + +1.4 1,630,072 - -0.1 1,630,096 + +0.4 1,630,096 + -0.7 1,630,096 + +2.2 1,630,096 + +0.1 1,630,096 + +0.1 1,630,104 - +0.0 1,630,104 - -0.1 1,630,104 - +1.2 1,630,104 - +0.9 1,630,104 - -0.4 1,630,104 - -0.9 1,630,104 - -0.6 1,630,104 - +1.1 1,630,104 - -1.2 1,630,104 - +0.7 1,630,104 - +1.0 1,630,136 + -0.7 1,630,274 + PGA1_c15700 0.36 -1.3 1,630,292 + PGA1_c15700 0.42 +1.1 1,630,301 + PGA1_c15700 0.46 -0.6 1,630,301 + PGA1_c15700 0.46 -0.0 1,630,311 + PGA1_c15700 0.49 +0.8 1,630,311 + PGA1_c15700 0.49 -1.1 1,630,311 + PGA1_c15700 0.49 -0.1 1,630,408 + PGA1_c15700 0.84 +0.2 1,630,408 + PGA1_c15700 0.84 -0.2 1,630,408 + PGA1_c15700 0.84 +0.3 1,630,408 + PGA1_c15700 0.84 +0.4 1,630,408 + PGA1_c15700 0.84 -0.1 1,630,408 + PGA1_c15700 0.84 -0.7 1,630,416 - PGA1_c15700 0.87 +0.6 1,630,416 - PGA1_c15700 0.87 -0.8 1,630,416 - PGA1_c15700 0.87 +0.4 1,630,416 - PGA1_c15700 0.87 +0.2 1,630,416 - PGA1_c15700 0.87 +1.1 1,630,416 - PGA1_c15700 0.87 -0.4 1,630,416 - PGA1_c15700 0.87 +0.3 1,630,419 + PGA1_c15700 0.88 -0.3 1,630,427 - +0.5 1,630,473 - +0.1 1,630,480 + +0.1 1,630,486 + +0.3 1,630,494 - +0.5 1,630,515 + +0.5 1,630,520 + +0.6 1,630,520 + -0.9 1,630,520 + -1.0 1,630,520 + +0.2 1,630,528 - +0.3 1,630,543 + -0.4 1,630,613 + +0.9 1,630,745 + -0.3 1,630,790 + -2.0 1,630,795 + +0.6 1,630,961 - PGA1_c15710 0.13 +0.2 1,630,983 + PGA1_c15710 0.14 -0.4 1,631,038 - PGA1_c15710 0.19 +1.1 1,631,038 - PGA1_c15710 0.19 +0.3 1,631,076 + PGA1_c15710 0.22 +0.6 1,631,137 - PGA1_c15710 0.27 +0.5 1,631,204 - PGA1_c15710 0.33 +1.0 1,631,377 + PGA1_c15710 0.47 +1.0 1,631,377 + PGA1_c15710 0.47 -0.5 1,631,393 + PGA1_c15710 0.48 +0.6 1,631,554 + PGA1_c15710 0.61 -2.8 1,631,589 + PGA1_c15710 0.64 -0.0 1,631,960 + +1.2 1,631,985 + +0.0 1,632,062 + -0.2 1,632,063 + -0.5 1,632,145 - -0.8 1,632,242 - PGA1_c15720 0.12 +0.7 1,632,289 + PGA1_c15720 0.17 -0.5 1,632,347 - PGA1_c15720 0.24 +0.4 1,632,402 + PGA1_c15720 0.30 +0.0 1,632,422 + PGA1_c15720 0.32 -1.1 1,632,422 + PGA1_c15720 0.32 -0.0 1,632,446 + PGA1_c15720 0.35 -1.0 1,632,461 + PGA1_c15720 0.36 -1.1 1,632,525 - PGA1_c15720 0.43 +1.2 1,632,535 - PGA1_c15720 0.44 -1.0 1,632,550 + PGA1_c15720 0.46 -0.1 1,632,607 + PGA1_c15720 0.52 +0.5 1,632,680 - PGA1_c15720 0.60 +0.3 1,632,705 - PGA1_c15720 0.63 +0.7 1,632,726 + PGA1_c15720 0.65 -0.7 1,632,783 + PGA1_c15720 0.72 +0.4 1,632,844 - PGA1_c15720 0.78 +0.2 1,632,914 - PGA1_c15720 0.86 +0.7 1,632,935 - PGA1_c15720 0.88 +0.6 1,632,964 + -1.2
Or see this region's nucleotide sequence