Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c15270 and PGA1_c15280 are separated by 94 nucleotides PGA1_c15280 and PGA1_c15290 are separated by 80 nucleotides PGA1_c15290 and PGA1_c15300 are separated by 116 nucleotides
PGA1_c15270: PGA1_c15270 - alanyl-tRNA synthetase AlaS, at 1,590,587 to 1,593,238
_c15270
PGA1_c15280: PGA1_c15280 - Uncharacterized conserved protein, at 1,593,333 to 1,593,620
_c15280
PGA1_c15290: PGA1_c15290 - Lactoylglutathione lyase and related lyases, at 1,593,701 to 1,594,282
_c15290
PGA1_c15300: PGA1_c15300 - GTP-binding protein TypA, at 1,594,399 to 1,596,219
_c15300
Position (kb)
1593
1594
1595 Strain fitness (log2 ratio)
-2
-1
0
1 at 1593.238 kb on + strand at 1593.314 kb on + strand at 1593.519 kb on - strand, within PGA1_c15280 at 1593.558 kb on + strand, within PGA1_c15280 at 1593.558 kb on + strand, within PGA1_c15280 at 1593.566 kb on - strand, within PGA1_c15280 at 1593.573 kb on - strand, within PGA1_c15280 at 1593.588 kb on - strand, within PGA1_c15280 at 1593.641 kb on + strand at 1593.649 kb on - strand at 1593.718 kb on - strand at 1593.718 kb on - strand at 1593.718 kb on - strand at 1593.732 kb on + strand at 1593.788 kb on + strand, within PGA1_c15290 at 1593.836 kb on + strand, within PGA1_c15290 at 1594.036 kb on - strand, within PGA1_c15290 at 1594.085 kb on + strand, within PGA1_c15290 at 1594.238 kb on + strand at 1594.267 kb on + strand at 1594.268 kb on - strand at 1594.275 kb on - strand at 1594.286 kb on + strand at 1594.318 kb on + strand at 1594.318 kb on + strand at 1594.326 kb on - strand at 1594.326 kb on - strand at 1594.416 kb on - strand at 1594.437 kb on + strand at 1594.709 kb on - strand, within PGA1_c15300 at 1594.724 kb on - strand, within PGA1_c15300 at 1594.777 kb on + strand, within PGA1_c15300 at 1594.824 kb on - strand, within PGA1_c15300 at 1594.903 kb on + strand, within PGA1_c15300 at 1594.922 kb on + strand, within PGA1_c15300 at 1594.943 kb on + strand, within PGA1_c15300 at 1594.943 kb on + strand, within PGA1_c15300 at 1594.951 kb on - strand, within PGA1_c15300 at 1595.233 kb on + strand, within PGA1_c15300 at 1595.241 kb on - strand, within PGA1_c15300
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (N) remove 1,593,238 + +0.4 1,593,314 + -0.4 1,593,519 - PGA1_c15280 0.65 -1.9 1,593,558 + PGA1_c15280 0.78 -0.4 1,593,558 + PGA1_c15280 0.78 -0.1 1,593,566 - PGA1_c15280 0.81 -0.7 1,593,573 - PGA1_c15280 0.83 -0.1 1,593,588 - PGA1_c15280 0.89 -0.4 1,593,641 + +0.3 1,593,649 - +0.7 1,593,718 - +0.5 1,593,718 - +0.2 1,593,718 - -0.3 1,593,732 + -0.9 1,593,788 + PGA1_c15290 0.15 -0.7 1,593,836 + PGA1_c15290 0.23 -0.7 1,594,036 - PGA1_c15290 0.58 -0.2 1,594,085 + PGA1_c15290 0.66 -0.6 1,594,238 + -1.2 1,594,267 + +0.3 1,594,268 - +0.7 1,594,275 - +1.0 1,594,286 + +1.0 1,594,318 + +0.4 1,594,318 + -0.6 1,594,326 - +0.3 1,594,326 - -0.4 1,594,416 - -0.2 1,594,437 + +0.5 1,594,709 - PGA1_c15300 0.17 +1.2 1,594,724 - PGA1_c15300 0.18 -0.1 1,594,777 + PGA1_c15300 0.21 -0.5 1,594,824 - PGA1_c15300 0.23 -0.2 1,594,903 + PGA1_c15300 0.28 +0.7 1,594,922 + PGA1_c15300 0.29 +0.6 1,594,943 + PGA1_c15300 0.30 -1.1 1,594,943 + PGA1_c15300 0.30 +0.4 1,594,951 - PGA1_c15300 0.30 +1.5 1,595,233 + PGA1_c15300 0.46 +0.8 1,595,241 - PGA1_c15300 0.46 +0.0
Or see this region's nucleotide sequence