Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14740 and PGA1_c14750 are separated by 2 nucleotides PGA1_c14750 and PGA1_c14760 overlap by 4 nucleotides PGA1_c14760 and PGA1_c14770 are separated by 191 nucleotides
PGA1_c14740: PGA1_c14740 - competence/damage-inducible protein CinA C-terminal domain, at 1,527,474 to 1,527,956
_c14740
PGA1_c14750: PGA1_c14750 - phosphatidylglycerophosphatase, at 1,527,959 to 1,528,465
_c14750
PGA1_c14760: PGA1_c14760 - bifunctional enzyme IspDF, at 1,528,462 to 1,529,682
_c14760
PGA1_c14770: PGA1_c14770 - tRNA-dihydrouridine synthase DusB, at 1,529,874 to 1,530,887
_c14770
Position (kb)
1528
1529
1530 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1527.467 kb on - strand at 1527.526 kb on - strand, within PGA1_c14740 at 1527.602 kb on + strand, within PGA1_c14740 at 1527.611 kb on + strand, within PGA1_c14740 at 1527.611 kb on + strand, within PGA1_c14740 at 1527.619 kb on - strand, within PGA1_c14740 at 1527.619 kb on - strand, within PGA1_c14740 at 1527.641 kb on + strand, within PGA1_c14740 at 1527.651 kb on + strand, within PGA1_c14740 at 1527.687 kb on + strand, within PGA1_c14740 at 1527.820 kb on - strand, within PGA1_c14740 at 1527.830 kb on - strand, within PGA1_c14740 at 1527.835 kb on + strand, within PGA1_c14740 at 1527.862 kb on - strand, within PGA1_c14740 at 1527.928 kb on + strand at 1527.944 kb on - strand at 1528.957 kb on - strand, within PGA1_c14760 at 1529.660 kb on + strand at 1529.716 kb on + strand at 1529.753 kb on - strand at 1529.805 kb on + strand at 1529.898 kb on + strand at 1530.026 kb on + strand, within PGA1_c14770 at 1530.026 kb on + strand, within PGA1_c14770 at 1530.034 kb on - strand, within PGA1_c14770 at 1530.034 kb on - strand, within PGA1_c14770 at 1530.074 kb on + strand, within PGA1_c14770 at 1530.358 kb on + strand, within PGA1_c14770 at 1530.363 kb on + strand, within PGA1_c14770 at 1530.371 kb on - strand, within PGA1_c14770 at 1530.443 kb on + strand, within PGA1_c14770 at 1530.451 kb on - strand, within PGA1_c14770 at 1530.487 kb on - strand, within PGA1_c14770 at 1530.532 kb on - strand, within PGA1_c14770 at 1530.661 kb on - strand, within PGA1_c14770
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (N) remove 1,527,467 - +0.1 1,527,526 - PGA1_c14740 0.11 +0.8 1,527,602 + PGA1_c14740 0.27 +1.0 1,527,611 + PGA1_c14740 0.28 +1.4 1,527,611 + PGA1_c14740 0.28 -1.7 1,527,619 - PGA1_c14740 0.30 +0.4 1,527,619 - PGA1_c14740 0.30 +0.3 1,527,641 + PGA1_c14740 0.35 +0.6 1,527,651 + PGA1_c14740 0.37 +0.3 1,527,687 + PGA1_c14740 0.44 -0.1 1,527,820 - PGA1_c14740 0.72 -0.1 1,527,830 - PGA1_c14740 0.74 +0.5 1,527,835 + PGA1_c14740 0.75 -0.8 1,527,862 - PGA1_c14740 0.80 -1.1 1,527,928 + +0.7 1,527,944 - -0.6 1,528,957 - PGA1_c14760 0.41 +0.6 1,529,660 + -1.1 1,529,716 + -1.2 1,529,753 - +0.8 1,529,805 + -0.8 1,529,898 + -1.2 1,530,026 + PGA1_c14770 0.15 -2.5 1,530,026 + PGA1_c14770 0.15 -1.2 1,530,034 - PGA1_c14770 0.16 -3.6 1,530,034 - PGA1_c14770 0.16 -1.3 1,530,074 + PGA1_c14770 0.20 -1.3 1,530,358 + PGA1_c14770 0.48 +0.1 1,530,363 + PGA1_c14770 0.48 -0.3 1,530,371 - PGA1_c14770 0.49 -2.3 1,530,443 + PGA1_c14770 0.56 -2.4 1,530,451 - PGA1_c14770 0.57 -1.6 1,530,487 - PGA1_c14770 0.60 -0.6 1,530,532 - PGA1_c14770 0.65 -0.3 1,530,661 - PGA1_c14770 0.78 -1.6
Or see this region's nucleotide sequence