Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14690 and PGA1_c14700 are separated by 51 nucleotides PGA1_c14700 and PGA1_c14710 are separated by 216 nucleotides PGA1_c14710 and PGA1_c14720 are separated by 73 nucleotides PGA1_c14720 and PGA1_c14730 are separated by 77 nucleotides
PGA1_c14690: PGA1_c14690 - putative hydrolase, at 1,523,207 to 1,524,349
_c14690
PGA1_c14700: PGA1_c14700 - hypothetical protein, at 1,524,401 to 1,524,727
_c14700
PGA1_c14710: PGA1_c14710 - hypoxanthine-guanine phosphoribosyltransferase Hpt, at 1,524,944 to 1,525,489
_c14710
PGA1_c14720: PGA1_c14720 - Oligoketide cyclase/lipid transport protein, at 1,525,563 to 1,526,009
_c14720
PGA1_c14730: PGA1_c14730 - ammonia channel, at 1,526,087 to 1,527,268
_c14730
Position (kb)
1524
1525
1526 Strain fitness (log2 ratio)
-1
0
1 at 1523.948 kb on + strand, within PGA1_c14690 at 1523.958 kb on + strand, within PGA1_c14690 at 1524.018 kb on - strand, within PGA1_c14690 at 1524.047 kb on + strand, within PGA1_c14690 at 1524.061 kb on - strand, within PGA1_c14690 at 1524.169 kb on + strand, within PGA1_c14690 at 1524.175 kb on + strand, within PGA1_c14690 at 1524.175 kb on + strand, within PGA1_c14690 at 1524.175 kb on + strand, within PGA1_c14690 at 1524.427 kb on - strand at 1524.460 kb on - strand, within PGA1_c14700 at 1524.463 kb on - strand, within PGA1_c14700 at 1524.500 kb on + strand, within PGA1_c14700 at 1524.508 kb on - strand, within PGA1_c14700 at 1524.620 kb on + strand, within PGA1_c14700 at 1524.653 kb on - strand, within PGA1_c14700 at 1524.699 kb on - strand at 1524.711 kb on + strand at 1524.764 kb on + strand at 1524.828 kb on - strand at 1524.861 kb on - strand at 1525.050 kb on - strand, within PGA1_c14710 at 1525.128 kb on - strand, within PGA1_c14710 at 1525.146 kb on + strand, within PGA1_c14710 at 1525.170 kb on - strand, within PGA1_c14710 at 1525.378 kb on + strand, within PGA1_c14710 at 1525.421 kb on - strand, within PGA1_c14710 at 1525.559 kb on + strand at 1525.592 kb on + strand at 1525.600 kb on - strand at 1525.610 kb on - strand, within PGA1_c14720 at 1525.817 kb on - strand, within PGA1_c14720 at 1525.998 kb on + strand at 1526.016 kb on - strand at 1526.083 kb on + strand at 1526.091 kb on - strand at 1526.096 kb on - strand at 1526.124 kb on + strand at 1526.132 kb on - strand at 1526.377 kb on + strand, within PGA1_c14730
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (N) remove 1,523,948 + PGA1_c14690 0.65 +0.4 1,523,958 + PGA1_c14690 0.66 -0.1 1,524,018 - PGA1_c14690 0.71 +0.7 1,524,047 + PGA1_c14690 0.73 -0.2 1,524,061 - PGA1_c14690 0.75 -0.2 1,524,169 + PGA1_c14690 0.84 +0.2 1,524,175 + PGA1_c14690 0.85 -0.8 1,524,175 + PGA1_c14690 0.85 -0.6 1,524,175 + PGA1_c14690 0.85 +0.1 1,524,427 - +0.1 1,524,460 - PGA1_c14700 0.18 -0.1 1,524,463 - PGA1_c14700 0.19 +1.0 1,524,500 + PGA1_c14700 0.30 +0.4 1,524,508 - PGA1_c14700 0.33 +0.4 1,524,620 + PGA1_c14700 0.67 -0.4 1,524,653 - PGA1_c14700 0.77 +0.1 1,524,699 - -0.5 1,524,711 + -0.7 1,524,764 + +0.2 1,524,828 - +0.4 1,524,861 - -0.3 1,525,050 - PGA1_c14710 0.19 +0.2 1,525,128 - PGA1_c14710 0.34 +0.6 1,525,146 + PGA1_c14710 0.37 -0.1 1,525,170 - PGA1_c14710 0.41 +0.8 1,525,378 + PGA1_c14710 0.79 +1.6 1,525,421 - PGA1_c14710 0.87 -1.1 1,525,559 + -0.2 1,525,592 + -0.3 1,525,600 - +1.6 1,525,610 - PGA1_c14720 0.11 -1.2 1,525,817 - PGA1_c14720 0.57 -0.2 1,525,998 + -0.5 1,526,016 - -1.1 1,526,083 + +0.2 1,526,091 - +0.7 1,526,096 - -0.8 1,526,124 + +0.7 1,526,132 - -1.5 1,526,377 + PGA1_c14730 0.25 +1.0
Or see this region's nucleotide sequence