Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c11760

Experiment: L-Methionine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c11750 and PGA1_c11760 are separated by 135 nucleotidesPGA1_c11760 and PGA1_c11770 are separated by 69 nucleotidesPGA1_c11770 and PGA1_c11780 are separated by 109 nucleotides PGA1_c11750: PGA1_c11750 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data), at 1,215,988 to 1,219,464 _c11750 PGA1_c11760: PGA1_c11760 - putative proline dehydrogenase transcriptional activator, at 1,219,600 to 1,220,073 _c11760 PGA1_c11770: PGA1_c11770 - tetratricopeptide repeat-containing protein, at 1,220,143 to 1,220,775 _c11770 PGA1_c11780: PGA1_c11780 - tRNA-Leu, at 1,220,885 to 1,220,970 _c11780 Position (kb) 1219 1220 1221Strain fitness (log2 ratio) -3 -2 -1 0 1at 1218.669 kb on + strand, within PGA1_c11750at 1218.736 kb on + strand, within PGA1_c11750at 1218.736 kb on + strand, within PGA1_c11750at 1218.945 kb on - strand, within PGA1_c11750at 1218.945 kb on - strand, within PGA1_c11750at 1218.985 kb on + strand, within PGA1_c11750at 1218.985 kb on + strand, within PGA1_c11750at 1218.990 kb on + strand, within PGA1_c11750at 1219.055 kb on + strand, within PGA1_c11750at 1219.055 kb on + strand, within PGA1_c11750at 1219.063 kb on - strand, within PGA1_c11750at 1219.073 kb on - strand, within PGA1_c11750at 1219.076 kb on + strand, within PGA1_c11750at 1219.175 kb on + strandat 1219.180 kb on + strandat 1219.180 kb on + strandat 1219.180 kb on + strandat 1219.239 kb on + strandat 1219.395 kb on + strandat 1219.402 kb on + strandat 1219.651 kb on + strand, within PGA1_c11760at 1219.651 kb on + strand, within PGA1_c11760at 1219.665 kb on - strand, within PGA1_c11760at 1219.687 kb on - strand, within PGA1_c11760at 1219.748 kb on - strand, within PGA1_c11760at 1219.803 kb on + strand, within PGA1_c11760at 1219.897 kb on + strand, within PGA1_c11760at 1219.897 kb on + strand, within PGA1_c11760at 1219.989 kb on + strand, within PGA1_c11760at 1220.017 kb on + strand, within PGA1_c11760at 1220.025 kb on - strand, within PGA1_c11760at 1220.060 kb on - strandat 1220.070 kb on - strandat 1220.133 kb on + strandat 1220.133 kb on + strandat 1220.151 kb on + strandat 1220.151 kb on + strandat 1220.151 kb on + strandat 1220.151 kb on + strandat 1220.159 kb on - strandat 1220.159 kb on - strandat 1220.210 kb on - strand, within PGA1_c11770at 1220.224 kb on - strand, within PGA1_c11770at 1220.230 kb on + strand, within PGA1_c11770at 1220.290 kb on - strand, within PGA1_c11770at 1220.290 kb on - strand, within PGA1_c11770at 1220.305 kb on + strand, within PGA1_c11770at 1220.466 kb on + strand, within PGA1_c11770at 1220.548 kb on + strand, within PGA1_c11770at 1220.556 kb on - strand, within PGA1_c11770at 1220.556 kb on - strand, within PGA1_c11770at 1220.556 kb on - strand, within PGA1_c11770at 1220.556 kb on - strand, within PGA1_c11770at 1220.556 kb on - strand, within PGA1_c11770at 1220.570 kb on + strand, within PGA1_c11770at 1220.580 kb on - strand, within PGA1_c11770at 1220.599 kb on + strand, within PGA1_c11770at 1220.599 kb on + strand, within PGA1_c11770at 1220.665 kb on + strand, within PGA1_c11770at 1220.711 kb on - strand, within PGA1_c11770at 1220.769 kb on + strandat 1220.777 kb on + strandat 1220.870 kb on + strandat 1220.870 kb on + strandat 1221.030 kb on + strandat 1221.070 kb on + strandat 1221.073 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
remove
1,218,669 + PGA1_c11750 0.77 -0.3
1,218,736 + PGA1_c11750 0.79 +0.1
1,218,736 + PGA1_c11750 0.79 -0.3
1,218,945 - PGA1_c11750 0.85 -0.2
1,218,945 - PGA1_c11750 0.85 -0.2
1,218,985 + PGA1_c11750 0.86 +0.6
1,218,985 + PGA1_c11750 0.86 -0.2
1,218,990 + PGA1_c11750 0.86 -0.2
1,219,055 + PGA1_c11750 0.88 +1.2
1,219,055 + PGA1_c11750 0.88 +0.2
1,219,063 - PGA1_c11750 0.88 +0.2
1,219,073 - PGA1_c11750 0.89 -0.3
1,219,076 + PGA1_c11750 0.89 -1.4
1,219,175 + -0.9
1,219,180 + +0.0
1,219,180 + -0.1
1,219,180 + +0.5
1,219,239 + -0.6
1,219,395 + +0.1
1,219,402 + -0.1
1,219,651 + PGA1_c11760 0.11 +0.4
1,219,651 + PGA1_c11760 0.11 +0.0
1,219,665 - PGA1_c11760 0.14 -0.8
1,219,687 - PGA1_c11760 0.18 +0.5
1,219,748 - PGA1_c11760 0.31 +0.2
1,219,803 + PGA1_c11760 0.43 +0.2
1,219,897 + PGA1_c11760 0.63 +0.1
1,219,897 + PGA1_c11760 0.63 +1.0
1,219,989 + PGA1_c11760 0.82 -0.3
1,220,017 + PGA1_c11760 0.88 +0.8
1,220,025 - PGA1_c11760 0.90 -0.2
1,220,060 - +0.0
1,220,070 - -0.1
1,220,133 + +0.4
1,220,133 + +1.0
1,220,151 + +0.5
1,220,151 + +0.1
1,220,151 + +0.7
1,220,151 + +0.2
1,220,159 - +0.1
1,220,159 - -0.5
1,220,210 - PGA1_c11770 0.11 +0.8
1,220,224 - PGA1_c11770 0.13 -0.3
1,220,230 + PGA1_c11770 0.14 -0.3
1,220,290 - PGA1_c11770 0.23 +0.4
1,220,290 - PGA1_c11770 0.23 +0.3
1,220,305 + PGA1_c11770 0.26 +0.4
1,220,466 + PGA1_c11770 0.51 +0.1
1,220,548 + PGA1_c11770 0.64 +0.8
1,220,556 - PGA1_c11770 0.65 -0.1
1,220,556 - PGA1_c11770 0.65 -0.1
1,220,556 - PGA1_c11770 0.65 -0.8
1,220,556 - PGA1_c11770 0.65 +0.7
1,220,556 - PGA1_c11770 0.65 -0.5
1,220,570 + PGA1_c11770 0.67 -2.2
1,220,580 - PGA1_c11770 0.69 -1.2
1,220,599 + PGA1_c11770 0.72 +0.1
1,220,599 + PGA1_c11770 0.72 -0.4
1,220,665 + PGA1_c11770 0.82 +0.4
1,220,711 - PGA1_c11770 0.90 +0.3
1,220,769 + -0.4
1,220,777 + +0.5
1,220,870 + -2.8
1,220,870 + -2.4
1,221,030 + +0.4
1,221,070 + -0.9
1,221,073 - -0.2

Or see this region's nucleotide sequence