Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27865 and BWI76_RS27870 overlap by 4 nucleotides BWI76_RS27870 and BWI76_RS27875 overlap by 11 nucleotides BWI76_RS27875 and BWI76_RS27880 are separated by 179 nucleotides BWI76_RS27880 and BWI76_RS27885 overlap by 4 nucleotides
BWI76_RS27865: BWI76_RS27865 - hypothetical protein, at 5,780,117 to 5,780,647
_RS27865
BWI76_RS27870: BWI76_RS27870 - membrane protein, at 5,780,644 to 5,781,006
_RS27870
BWI76_RS27875: BWI76_RS27875 - membrane protein, at 5,780,996 to 5,781,343
_RS27875
BWI76_RS27880: BWI76_RS27880 - 6-phospho-alpha-glucosidase, at 5,781,523 to 5,782,845
_RS27880
BWI76_RS27885: BWI76_RS27885 - PTS alpha-glucoside transporter subunit IICB, at 5,782,842 to 5,784,464
_RS27885
Position (kb) 5781
5782
5783 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5780.600 kb on - strand at 5780.679 kb on + strand at 5780.693 kb on - strand, within BWI76_RS27870 at 5780.775 kb on + strand, within BWI76_RS27870 at 5780.917 kb on + strand, within BWI76_RS27870 at 5780.917 kb on + strand, within BWI76_RS27870 at 5780.925 kb on - strand, within BWI76_RS27870 at 5781.046 kb on + strand, within BWI76_RS27875 at 5781.091 kb on + strand, within BWI76_RS27875 at 5781.539 kb on - strand at 5781.613 kb on - strand at 5781.697 kb on + strand, within BWI76_RS27880 at 5782.010 kb on + strand, within BWI76_RS27880 at 5782.044 kb on + strand, within BWI76_RS27880 at 5782.052 kb on - strand, within BWI76_RS27880 at 5782.053 kb on - strand, within BWI76_RS27880 at 5782.105 kb on - strand, within BWI76_RS27880 at 5782.191 kb on + strand, within BWI76_RS27880 at 5782.262 kb on - strand, within BWI76_RS27880 at 5782.295 kb on - strand, within BWI76_RS27880 at 5782.295 kb on - strand, within BWI76_RS27880 at 5782.404 kb on + strand, within BWI76_RS27880 at 5782.462 kb on + strand, within BWI76_RS27880 at 5782.643 kb on - strand, within BWI76_RS27880 at 5782.695 kb on + strand, within BWI76_RS27880 at 5782.716 kb on - strand at 5782.797 kb on + strand at 5782.797 kb on + strand at 5782.797 kb on + strand at 5782.805 kb on - strand at 5782.874 kb on - strand at 5782.900 kb on + strand at 5782.927 kb on - strand at 5782.967 kb on + strand at 5783.053 kb on + strand, within BWI76_RS27885 at 5783.053 kb on - strand, within BWI76_RS27885 at 5783.207 kb on + strand, within BWI76_RS27885 at 5783.215 kb on - strand, within BWI76_RS27885 at 5783.215 kb on - strand, within BWI76_RS27885 at 5783.393 kb on - strand, within BWI76_RS27885 at 5783.424 kb on - strand, within BWI76_RS27885 at 5783.515 kb on - strand, within BWI76_RS27885 at 5783.527 kb on - strand, within BWI76_RS27885 at 5783.527 kb on - strand, within BWI76_RS27885 at 5783.625 kb on - strand, within BWI76_RS27885 at 5783.628 kb on - strand, within BWI76_RS27885 at 5783.638 kb on - strand, within BWI76_RS27885 at 5783.745 kb on + strand, within BWI76_RS27885 at 5783.828 kb on + strand, within BWI76_RS27885
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 5,780,600 - +0.8 5,780,679 + -1.3 5,780,693 - BWI76_RS27870 0.13 -0.3 5,780,775 + BWI76_RS27870 0.36 -0.3 5,780,917 + BWI76_RS27870 0.75 -0.1 5,780,917 + BWI76_RS27870 0.75 +0.0 5,780,925 - BWI76_RS27870 0.77 +0.2 5,781,046 + BWI76_RS27875 0.14 -0.5 5,781,091 + BWI76_RS27875 0.27 +2.0 5,781,539 - -0.0 5,781,613 - -0.5 5,781,697 + BWI76_RS27880 0.13 -2.2 5,782,010 + BWI76_RS27880 0.37 -0.6 5,782,044 + BWI76_RS27880 0.39 -1.1 5,782,052 - BWI76_RS27880 0.40 +1.4 5,782,053 - BWI76_RS27880 0.40 +0.9 5,782,105 - BWI76_RS27880 0.44 -1.7 5,782,191 + BWI76_RS27880 0.50 -0.8 5,782,262 - BWI76_RS27880 0.56 +0.3 5,782,295 - BWI76_RS27880 0.58 -1.0 5,782,295 - BWI76_RS27880 0.58 +0.1 5,782,404 + BWI76_RS27880 0.67 -0.7 5,782,462 + BWI76_RS27880 0.71 +0.2 5,782,643 - BWI76_RS27880 0.85 -0.4 5,782,695 + BWI76_RS27880 0.89 -0.0 5,782,716 - +0.0 5,782,797 + -0.2 5,782,797 + +0.0 5,782,797 + +0.1 5,782,805 - -0.5 5,782,874 - +0.3 5,782,900 + -1.4 5,782,927 - +0.3 5,782,967 + -1.9 5,783,053 + BWI76_RS27885 0.13 +2.1 5,783,053 - BWI76_RS27885 0.13 -2.0 5,783,207 + BWI76_RS27885 0.22 +0.8 5,783,215 - BWI76_RS27885 0.23 -2.0 5,783,215 - BWI76_RS27885 0.23 -1.4 5,783,393 - BWI76_RS27885 0.34 +0.6 5,783,424 - BWI76_RS27885 0.36 -0.0 5,783,515 - BWI76_RS27885 0.41 +0.1 5,783,527 - BWI76_RS27885 0.42 -3.1 5,783,527 - BWI76_RS27885 0.42 +1.3 5,783,625 - BWI76_RS27885 0.48 +1.7 5,783,628 - BWI76_RS27885 0.48 -0.4 5,783,638 - BWI76_RS27885 0.49 -1.7 5,783,745 + BWI76_RS27885 0.56 -0.7 5,783,828 + BWI76_RS27885 0.61 -1.6
Or see this region's nucleotide sequence