Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27860 and BWI76_RS27865 are separated by 53 nucleotides BWI76_RS27865 and BWI76_RS27870 overlap by 4 nucleotides BWI76_RS27870 and BWI76_RS27875 overlap by 11 nucleotides BWI76_RS27875 and BWI76_RS27880 are separated by 179 nucleotides
BWI76_RS27860: BWI76_RS27860 - D-serine dehydratase, at 5,778,735 to 5,780,063
_RS27860
BWI76_RS27865: BWI76_RS27865 - hypothetical protein, at 5,780,117 to 5,780,647
_RS27865
BWI76_RS27870: BWI76_RS27870 - membrane protein, at 5,780,644 to 5,781,006
_RS27870
BWI76_RS27875: BWI76_RS27875 - membrane protein, at 5,780,996 to 5,781,343
_RS27875
BWI76_RS27880: BWI76_RS27880 - 6-phospho-alpha-glucosidase, at 5,781,523 to 5,782,845
_RS27880
Position (kb) 5780
5781 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5779.167 kb on - strand, within BWI76_RS27860 at 5779.214 kb on + strand, within BWI76_RS27860 at 5779.222 kb on - strand, within BWI76_RS27860 at 5779.290 kb on - strand, within BWI76_RS27860 at 5779.296 kb on + strand, within BWI76_RS27860 at 5779.296 kb on + strand, within BWI76_RS27860 at 5779.304 kb on - strand, within BWI76_RS27860 at 5779.384 kb on - strand, within BWI76_RS27860 at 5779.417 kb on + strand, within BWI76_RS27860 at 5779.503 kb on - strand, within BWI76_RS27860 at 5779.692 kb on - strand, within BWI76_RS27860 at 5779.811 kb on + strand, within BWI76_RS27860 at 5779.841 kb on - strand, within BWI76_RS27860 at 5779.912 kb on + strand, within BWI76_RS27860 at 5779.957 kb on + strand at 5779.976 kb on - strand at 5780.042 kb on + strand at 5780.143 kb on - strand at 5780.233 kb on + strand, within BWI76_RS27865 at 5780.289 kb on - strand, within BWI76_RS27865 at 5780.375 kb on - strand, within BWI76_RS27865 at 5780.375 kb on - strand, within BWI76_RS27865 at 5780.417 kb on + strand, within BWI76_RS27865 at 5780.600 kb on - strand at 5780.679 kb on + strand at 5780.693 kb on - strand, within BWI76_RS27870 at 5780.775 kb on + strand, within BWI76_RS27870 at 5780.917 kb on + strand, within BWI76_RS27870 at 5780.917 kb on + strand, within BWI76_RS27870 at 5780.925 kb on - strand, within BWI76_RS27870 at 5781.046 kb on + strand, within BWI76_RS27875 at 5781.091 kb on + strand, within BWI76_RS27875 at 5781.539 kb on - strand at 5781.613 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 5,779,167 - BWI76_RS27860 0.33 +1.2 5,779,214 + BWI76_RS27860 0.36 +0.6 5,779,222 - BWI76_RS27860 0.37 -0.3 5,779,290 - BWI76_RS27860 0.42 +1.1 5,779,296 + BWI76_RS27860 0.42 -2.4 5,779,296 + BWI76_RS27860 0.42 -0.7 5,779,304 - BWI76_RS27860 0.43 +0.2 5,779,384 - BWI76_RS27860 0.49 -2.5 5,779,417 + BWI76_RS27860 0.51 +1.4 5,779,503 - BWI76_RS27860 0.58 +0.3 5,779,692 - BWI76_RS27860 0.72 -1.0 5,779,811 + BWI76_RS27860 0.81 +1.5 5,779,841 - BWI76_RS27860 0.83 -0.6 5,779,912 + BWI76_RS27860 0.89 +0.4 5,779,957 + +0.6 5,779,976 - +0.2 5,780,042 + +1.3 5,780,143 - -0.4 5,780,233 + BWI76_RS27865 0.22 -1.3 5,780,289 - BWI76_RS27865 0.32 -0.0 5,780,375 - BWI76_RS27865 0.49 -0.5 5,780,375 - BWI76_RS27865 0.49 -0.6 5,780,417 + BWI76_RS27865 0.56 -0.7 5,780,600 - +0.8 5,780,679 + -1.3 5,780,693 - BWI76_RS27870 0.13 -0.3 5,780,775 + BWI76_RS27870 0.36 -0.3 5,780,917 + BWI76_RS27870 0.75 -0.1 5,780,917 + BWI76_RS27870 0.75 +0.0 5,780,925 - BWI76_RS27870 0.77 +0.2 5,781,046 + BWI76_RS27875 0.14 -0.5 5,781,091 + BWI76_RS27875 0.27 +2.0 5,781,539 - -0.0 5,781,613 - -0.5
Or see this region's nucleotide sequence