Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26950 and BWI76_RS26955 are separated by 101 nucleotides BWI76_RS26955 and BWI76_RS26960 are separated by 24 nucleotides
BWI76_RS26950: BWI76_RS26950 - 2-dehydro-3-deoxygluconokinase, at 5,590,440 to 5,591,378
_RS26950
BWI76_RS26955: BWI76_RS26955 - MFS transporter, at 5,591,480 to 5,592,760
_RS26955
BWI76_RS26960: BWI76_RS26960 - bifunctional glyoxylate/hydroxypyruvate reductase B, at 5,592,785 to 5,593,756
_RS26960
Position (kb) 5591
5592
5593 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5590.562 kb on - strand, within BWI76_RS26950 at 5590.577 kb on + strand, within BWI76_RS26950 at 5590.588 kb on + strand, within BWI76_RS26950 at 5590.627 kb on + strand, within BWI76_RS26950 at 5590.676 kb on - strand, within BWI76_RS26950 at 5590.876 kb on - strand, within BWI76_RS26950 at 5591.035 kb on + strand, within BWI76_RS26950 at 5591.043 kb on - strand, within BWI76_RS26950 at 5591.346 kb on + strand at 5591.386 kb on - strand at 5591.546 kb on + strand at 5591.580 kb on - strand at 5591.624 kb on - strand, within BWI76_RS26955 at 5591.658 kb on - strand, within BWI76_RS26955 at 5591.720 kb on - strand, within BWI76_RS26955 at 5591.774 kb on + strand, within BWI76_RS26955 at 5591.811 kb on + strand, within BWI76_RS26955 at 5591.813 kb on - strand, within BWI76_RS26955 at 5591.893 kb on + strand, within BWI76_RS26955 at 5591.901 kb on - strand, within BWI76_RS26955 at 5591.940 kb on - strand, within BWI76_RS26955 at 5592.016 kb on + strand, within BWI76_RS26955 at 5592.033 kb on + strand, within BWI76_RS26955 at 5592.152 kb on + strand, within BWI76_RS26955 at 5592.182 kb on - strand, within BWI76_RS26955 at 5592.218 kb on - strand, within BWI76_RS26955 at 5592.226 kb on - strand, within BWI76_RS26955 at 5592.303 kb on - strand, within BWI76_RS26955 at 5592.351 kb on - strand, within BWI76_RS26955 at 5592.459 kb on + strand, within BWI76_RS26955 at 5592.459 kb on + strand, within BWI76_RS26955 at 5592.467 kb on - strand, within BWI76_RS26955 at 5592.467 kb on - strand, within BWI76_RS26955 at 5592.467 kb on - strand, within BWI76_RS26955 at 5592.467 kb on - strand, within BWI76_RS26955 at 5592.467 kb on - strand, within BWI76_RS26955 at 5592.488 kb on + strand, within BWI76_RS26955 at 5592.571 kb on + strand, within BWI76_RS26955 at 5592.614 kb on - strand, within BWI76_RS26955 at 5593.068 kb on + strand, within BWI76_RS26960 at 5593.162 kb on + strand, within BWI76_RS26960 at 5593.342 kb on + strand, within BWI76_RS26960 at 5593.406 kb on - strand, within BWI76_RS26960 at 5593.406 kb on - strand, within BWI76_RS26960 at 5593.655 kb on + strand, within BWI76_RS26960 at 5593.663 kb on - strand at 5593.664 kb on + strand at 5593.724 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 5,590,562 - BWI76_RS26950 0.13 -1.0 5,590,577 + BWI76_RS26950 0.15 -2.1 5,590,588 + BWI76_RS26950 0.16 -0.5 5,590,627 + BWI76_RS26950 0.20 +0.1 5,590,676 - BWI76_RS26950 0.25 -0.9 5,590,876 - BWI76_RS26950 0.46 +0.6 5,591,035 + BWI76_RS26950 0.63 +0.7 5,591,043 - BWI76_RS26950 0.64 -3.3 5,591,346 + -0.7 5,591,386 - +0.2 5,591,546 + +2.0 5,591,580 - +1.0 5,591,624 - BWI76_RS26955 0.11 -0.5 5,591,658 - BWI76_RS26955 0.14 -0.5 5,591,720 - BWI76_RS26955 0.19 +0.9 5,591,774 + BWI76_RS26955 0.23 -0.5 5,591,811 + BWI76_RS26955 0.26 +1.1 5,591,813 - BWI76_RS26955 0.26 -1.1 5,591,893 + BWI76_RS26955 0.32 +0.6 5,591,901 - BWI76_RS26955 0.33 +0.9 5,591,940 - BWI76_RS26955 0.36 +0.1 5,592,016 + BWI76_RS26955 0.42 +0.3 5,592,033 + BWI76_RS26955 0.43 +0.1 5,592,152 + BWI76_RS26955 0.52 +1.4 5,592,182 - BWI76_RS26955 0.55 -0.3 5,592,218 - BWI76_RS26955 0.58 -0.1 5,592,226 - BWI76_RS26955 0.58 +0.2 5,592,303 - BWI76_RS26955 0.64 +0.1 5,592,351 - BWI76_RS26955 0.68 -0.7 5,592,459 + BWI76_RS26955 0.76 +0.4 5,592,459 + BWI76_RS26955 0.76 +0.7 5,592,467 - BWI76_RS26955 0.77 +0.8 5,592,467 - BWI76_RS26955 0.77 -1.4 5,592,467 - BWI76_RS26955 0.77 +0.9 5,592,467 - BWI76_RS26955 0.77 +0.3 5,592,467 - BWI76_RS26955 0.77 -1.5 5,592,488 + BWI76_RS26955 0.79 -0.6 5,592,571 + BWI76_RS26955 0.85 +1.6 5,592,614 - BWI76_RS26955 0.89 -0.8 5,593,068 + BWI76_RS26960 0.29 -0.4 5,593,162 + BWI76_RS26960 0.39 -1.3 5,593,342 + BWI76_RS26960 0.57 -0.3 5,593,406 - BWI76_RS26960 0.64 -0.7 5,593,406 - BWI76_RS26960 0.64 -0.1 5,593,655 + BWI76_RS26960 0.90 -0.8 5,593,663 - +0.3 5,593,664 + -0.7 5,593,724 + -0.6
Or see this region's nucleotide sequence