Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23890 and BWI76_RS23895 overlap by 4 nucleotides BWI76_RS23895 and BWI76_RS23900 are separated by 28 nucleotides BWI76_RS23900 and BWI76_RS23905 are separated by 159 nucleotides
BWI76_RS23890: BWI76_RS23890 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 4,986,629 to 4,987,807
_RS23890
BWI76_RS23895: BWI76_RS23895 - Xaa-Pro aminopeptidase, at 4,987,804 to 4,989,120
_RS23895
BWI76_RS23900: BWI76_RS23900 - hypothetical protein, at 4,989,149 to 4,989,733
_RS23900
BWI76_RS23905: BWI76_RS23905 - Z-ring-associated protein, at 4,989,893 to 4,990,222
_RS23905
Position (kb) 4987
4988
4989
4990 Strain fitness (log2 ratio) -1
0
1 at 4987.969 kb on - strand, within BWI76_RS23895 at 4988.406 kb on - strand, within BWI76_RS23895 at 4988.824 kb on - strand, within BWI76_RS23895 at 4989.135 kb on - strand at 4989.254 kb on - strand, within BWI76_RS23900 at 4989.317 kb on - strand, within BWI76_RS23900 at 4989.661 kb on - strand, within BWI76_RS23900 at 4989.726 kb on - strand at 4989.726 kb on - strand at 4989.780 kb on - strand at 4989.815 kb on - strand at 4989.828 kb on + strand at 4989.964 kb on - strand, within BWI76_RS23905 at 4989.968 kb on + strand, within BWI76_RS23905 at 4989.969 kb on + strand, within BWI76_RS23905 at 4989.969 kb on + strand, within BWI76_RS23905 at 4989.976 kb on - strand, within BWI76_RS23905
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 4,987,969 - BWI76_RS23895 0.13 +1.0 4,988,406 - BWI76_RS23895 0.46 -0.7 4,988,824 - BWI76_RS23895 0.77 -1.5 4,989,135 - -0.3 4,989,254 - BWI76_RS23900 0.18 -0.5 4,989,317 - BWI76_RS23900 0.29 -0.3 4,989,661 - BWI76_RS23900 0.88 +0.1 4,989,726 - -1.5 4,989,726 - +0.5 4,989,780 - +0.9 4,989,815 - -0.7 4,989,828 + +0.1 4,989,964 - BWI76_RS23905 0.22 +0.4 4,989,968 + BWI76_RS23905 0.23 -0.2 4,989,969 + BWI76_RS23905 0.23 -0.6 4,989,969 + BWI76_RS23905 0.23 -1.4 4,989,976 - BWI76_RS23905 0.25 +0.1
Or see this region's nucleotide sequence