Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS21880 and BWI76_RS21885 are separated by 10 nucleotides BWI76_RS21885 and BWI76_RS21890 are separated by 12 nucleotides BWI76_RS21890 and BWI76_RS21895 are separated by 9 nucleotides BWI76_RS21895 and BWI76_RS21900 are separated by 24 nucleotides
BWI76_RS21880: BWI76_RS21880 - agmatinase, at 4,572,269 to 4,573,219
_RS21880
BWI76_RS21885: BWI76_RS21885 - AP endonuclease, family 2, at 4,573,230 to 4,574,078
_RS21885
BWI76_RS21890: BWI76_RS21890 - oxidoreductase, at 4,574,091 to 4,575,167
_RS21890
BWI76_RS21895: BWI76_RS21895 - amino acid ABC transport system periplasmic amino acid-binding component, at 4,575,177 to 4,575,980
_RS21895
BWI76_RS21900: BWI76_RS21900 - amino acid ABC transporter permease/ATP-binding protein, at 4,576,005 to 4,577,525
_RS21900
Position (kb) 4574
4575
4576 Strain fitness (log2 ratio) -2
-1
0
1 at 4573.261 kb on - strand at 4573.264 kb on + strand at 4573.431 kb on - strand, within BWI76_RS21885 at 4573.513 kb on + strand, within BWI76_RS21885 at 4573.615 kb on + strand, within BWI76_RS21885 at 4573.791 kb on + strand, within BWI76_RS21885 at 4573.799 kb on - strand, within BWI76_RS21885 at 4573.799 kb on - strand, within BWI76_RS21885 at 4573.890 kb on - strand, within BWI76_RS21885 at 4574.040 kb on - strand at 4574.323 kb on + strand, within BWI76_RS21890 at 4574.441 kb on + strand, within BWI76_RS21890 at 4574.449 kb on - strand, within BWI76_RS21890 at 4574.524 kb on + strand, within BWI76_RS21890 at 4574.655 kb on + strand, within BWI76_RS21890 at 4574.716 kb on - strand, within BWI76_RS21890 at 4575.036 kb on + strand, within BWI76_RS21890 at 4575.044 kb on - strand, within BWI76_RS21890 at 4575.068 kb on + strand at 4575.221 kb on - strand at 4575.221 kb on - strand at 4575.272 kb on + strand, within BWI76_RS21895 at 4575.357 kb on + strand, within BWI76_RS21895 at 4575.520 kb on + strand, within BWI76_RS21895 at 4575.520 kb on + strand, within BWI76_RS21895 at 4575.526 kb on - strand, within BWI76_RS21895 at 4575.527 kb on - strand, within BWI76_RS21895 at 4575.573 kb on - strand, within BWI76_RS21895 at 4575.606 kb on - strand, within BWI76_RS21895 at 4575.657 kb on + strand, within BWI76_RS21895 at 4575.818 kb on - strand, within BWI76_RS21895 at 4575.885 kb on - strand, within BWI76_RS21895 at 4575.924 kb on - strand at 4575.925 kb on - strand at 4576.142 kb on + strand at 4576.143 kb on - strand at 4576.144 kb on + strand at 4576.159 kb on + strand, within BWI76_RS21900
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 4,573,261 - +0.4 4,573,264 + +0.4 4,573,431 - BWI76_RS21885 0.24 +0.2 4,573,513 + BWI76_RS21885 0.33 +1.0 4,573,615 + BWI76_RS21885 0.45 -1.0 4,573,791 + BWI76_RS21885 0.66 -0.3 4,573,799 - BWI76_RS21885 0.67 +0.3 4,573,799 - BWI76_RS21885 0.67 -0.5 4,573,890 - BWI76_RS21885 0.78 -0.6 4,574,040 - -1.0 4,574,323 + BWI76_RS21890 0.22 +0.8 4,574,441 + BWI76_RS21890 0.32 +0.2 4,574,449 - BWI76_RS21890 0.33 +0.3 4,574,524 + BWI76_RS21890 0.40 +0.7 4,574,655 + BWI76_RS21890 0.52 -1.0 4,574,716 - BWI76_RS21890 0.58 +0.1 4,575,036 + BWI76_RS21890 0.88 +0.8 4,575,044 - BWI76_RS21890 0.88 +1.0 4,575,068 + +0.0 4,575,221 - -0.0 4,575,221 - -0.3 4,575,272 + BWI76_RS21895 0.12 -0.6 4,575,357 + BWI76_RS21895 0.22 +1.1 4,575,520 + BWI76_RS21895 0.43 +1.1 4,575,520 + BWI76_RS21895 0.43 +1.4 4,575,526 - BWI76_RS21895 0.43 +0.2 4,575,527 - BWI76_RS21895 0.44 +0.2 4,575,573 - BWI76_RS21895 0.49 +0.8 4,575,606 - BWI76_RS21895 0.53 -0.1 4,575,657 + BWI76_RS21895 0.60 -1.7 4,575,818 - BWI76_RS21895 0.80 -0.7 4,575,885 - BWI76_RS21895 0.88 -1.7 4,575,924 - -2.2 4,575,925 - -0.4 4,576,142 + -0.1 4,576,143 - -0.7 4,576,144 + -0.3 4,576,159 + BWI76_RS21900 0.10 +1.0
Or see this region's nucleotide sequence