Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19750 and BWI76_RS19755 are separated by 316 nucleotides BWI76_RS19755 and BWI76_RS19760 are separated by 119 nucleotides
BWI76_RS19750: BWI76_RS19750 - elongation factor P-like protein YeiP, at 4,128,667 to 4,129,239
_RS19750
BWI76_RS19755: BWI76_RS19755 - fructuronate reductase, at 4,129,556 to 4,131,022
_RS19755
BWI76_RS19760: BWI76_RS19760 - GTP-binding protein, at 4,131,142 to 4,132,119
_RS19760
Position (kb) 4129
4130
4131
4132 Strain fitness (log2 ratio) -2
-1
0
1 at 4128.561 kb on - strand at 4128.644 kb on + strand at 4128.794 kb on + strand, within BWI76_RS19750 at 4128.963 kb on + strand, within BWI76_RS19750 at 4129.178 kb on + strand, within BWI76_RS19750 at 4129.933 kb on - strand, within BWI76_RS19755 at 4129.973 kb on + strand, within BWI76_RS19755 at 4130.183 kb on - strand, within BWI76_RS19755 at 4130.610 kb on + strand, within BWI76_RS19755 at 4130.622 kb on - strand, within BWI76_RS19755 at 4130.773 kb on - strand, within BWI76_RS19755 at 4130.923 kb on + strand at 4131.102 kb on + strand at 4131.499 kb on - strand, within BWI76_RS19760 at 4131.616 kb on + strand, within BWI76_RS19760 at 4131.690 kb on + strand, within BWI76_RS19760 at 4131.852 kb on - strand, within BWI76_RS19760
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 4,128,561 - +0.5 4,128,644 + +1.4 4,128,794 + BWI76_RS19750 0.22 +0.2 4,128,963 + BWI76_RS19750 0.52 +0.5 4,129,178 + BWI76_RS19750 0.89 -1.4 4,129,933 - BWI76_RS19755 0.26 -1.1 4,129,973 + BWI76_RS19755 0.28 -0.2 4,130,183 - BWI76_RS19755 0.43 -1.3 4,130,610 + BWI76_RS19755 0.72 +0.5 4,130,622 - BWI76_RS19755 0.73 +0.3 4,130,773 - BWI76_RS19755 0.83 -2.3 4,130,923 + -0.9 4,131,102 + +0.1 4,131,499 - BWI76_RS19760 0.37 +0.7 4,131,616 + BWI76_RS19760 0.48 -0.8 4,131,690 + BWI76_RS19760 0.56 +0.1 4,131,852 - BWI76_RS19760 0.73 -0.7
Or see this region's nucleotide sequence