Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17235

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17225 and BWI76_RS17230 are separated by 11 nucleotidesBWI76_RS17230 and BWI76_RS17235 are separated by 14 nucleotidesBWI76_RS17235 and BWI76_RS17240 are separated by 88 nucleotides BWI76_RS17225: BWI76_RS17225 - oligopeptide ABC transporter ATP-binding protein OppD, at 3,567,714 to 3,568,727 _RS17225 BWI76_RS17230: BWI76_RS17230 - peptide ABC transporter permease, at 3,568,739 to 3,569,647 _RS17230 BWI76_RS17235: BWI76_RS17235 - peptide ABC transporter permease, at 3,569,662 to 3,570,582 _RS17235 BWI76_RS17240: BWI76_RS17240 - oligopeptide ABC transporter substrate-binding protein OppA, at 3,570,671 to 3,572,302 _RS17240 Position (kb) 3569 3570 3571Strain fitness (log2 ratio) -2 -1 0 1at 3568.745 kb on - strandat 3568.882 kb on + strand, within BWI76_RS17230at 3569.244 kb on - strand, within BWI76_RS17230at 3569.287 kb on - strand, within BWI76_RS17230at 3569.301 kb on + strand, within BWI76_RS17230at 3569.759 kb on - strand, within BWI76_RS17235at 3569.917 kb on + strand, within BWI76_RS17235at 3569.970 kb on + strand, within BWI76_RS17235at 3569.985 kb on - strand, within BWI76_RS17235at 3570.185 kb on - strand, within BWI76_RS17235at 3570.250 kb on + strand, within BWI76_RS17235at 3570.312 kb on - strand, within BWI76_RS17235at 3570.367 kb on - strand, within BWI76_RS17235at 3570.462 kb on + strand, within BWI76_RS17235at 3570.492 kb on + strandat 3570.492 kb on + strandat 3570.549 kb on + strandat 3570.549 kb on + strandat 3570.549 kb on + strandat 3570.584 kb on + strandat 3570.600 kb on - strandat 3570.600 kb on - strandat 3570.600 kb on - strandat 3570.600 kb on - strandat 3570.604 kb on + strandat 3570.645 kb on + strandat 3570.650 kb on + strandat 3570.658 kb on - strandat 3570.705 kb on + strandat 3570.713 kb on - strandat 3571.125 kb on + strand, within BWI76_RS17240at 3571.133 kb on - strand, within BWI76_RS17240at 3571.138 kb on + strand, within BWI76_RS17240at 3571.146 kb on - strand, within BWI76_RS17240at 3571.260 kb on + strand, within BWI76_RS17240at 3571.343 kb on + strand, within BWI76_RS17240at 3571.487 kb on + strand, within BWI76_RS17240

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
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3,568,745 - +0.8
3,568,882 + BWI76_RS17230 0.16 -0.0
3,569,244 - BWI76_RS17230 0.56 -1.1
3,569,287 - BWI76_RS17230 0.60 +0.3
3,569,301 + BWI76_RS17230 0.62 +0.7
3,569,759 - BWI76_RS17235 0.11 -1.5
3,569,917 + BWI76_RS17235 0.28 -1.3
3,569,970 + BWI76_RS17235 0.33 -0.1
3,569,985 - BWI76_RS17235 0.35 -2.2
3,570,185 - BWI76_RS17235 0.57 +0.3
3,570,250 + BWI76_RS17235 0.64 -1.9
3,570,312 - BWI76_RS17235 0.71 -1.6
3,570,367 - BWI76_RS17235 0.77 -1.9
3,570,462 + BWI76_RS17235 0.87 -1.6
3,570,492 + -1.4
3,570,492 + -0.8
3,570,549 + +0.3
3,570,549 + -1.3
3,570,549 + -0.1
3,570,584 + -1.1
3,570,600 - +0.3
3,570,600 - -0.9
3,570,600 - +0.2
3,570,600 - -0.3
3,570,604 + -0.2
3,570,645 + +0.1
3,570,650 + +0.3
3,570,658 - +0.8
3,570,705 + -0.9
3,570,713 - +0.2
3,571,125 + BWI76_RS17240 0.28 -1.0
3,571,133 - BWI76_RS17240 0.28 -0.0
3,571,138 + BWI76_RS17240 0.29 +0.4
3,571,146 - BWI76_RS17240 0.29 -1.0
3,571,260 + BWI76_RS17240 0.36 -0.4
3,571,343 + BWI76_RS17240 0.41 -0.2
3,571,487 + BWI76_RS17240 0.50 +0.0

Or see this region's nucleotide sequence