Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17225 and BWI76_RS17230 are separated by 11 nucleotides BWI76_RS17230 and BWI76_RS17235 are separated by 14 nucleotides BWI76_RS17235 and BWI76_RS17240 are separated by 88 nucleotides
BWI76_RS17225: BWI76_RS17225 - oligopeptide ABC transporter ATP-binding protein OppD, at 3,567,714 to 3,568,727
_RS17225
BWI76_RS17230: BWI76_RS17230 - peptide ABC transporter permease, at 3,568,739 to 3,569,647
_RS17230
BWI76_RS17235: BWI76_RS17235 - peptide ABC transporter permease, at 3,569,662 to 3,570,582
_RS17235
BWI76_RS17240: BWI76_RS17240 - oligopeptide ABC transporter substrate-binding protein OppA, at 3,570,671 to 3,572,302
_RS17240
Position (kb)
3569
3570
3571 Strain fitness (log2 ratio)
-2
-1
0
1 at 3568.745 kb on - strand at 3568.882 kb on + strand, within BWI76_RS17230 at 3569.244 kb on - strand, within BWI76_RS17230 at 3569.287 kb on - strand, within BWI76_RS17230 at 3569.301 kb on + strand, within BWI76_RS17230 at 3569.759 kb on - strand, within BWI76_RS17235 at 3569.917 kb on + strand, within BWI76_RS17235 at 3569.970 kb on + strand, within BWI76_RS17235 at 3569.985 kb on - strand, within BWI76_RS17235 at 3570.185 kb on - strand, within BWI76_RS17235 at 3570.250 kb on + strand, within BWI76_RS17235 at 3570.312 kb on - strand, within BWI76_RS17235 at 3570.367 kb on - strand, within BWI76_RS17235 at 3570.462 kb on + strand, within BWI76_RS17235 at 3570.492 kb on + strand at 3570.492 kb on + strand at 3570.549 kb on + strand at 3570.549 kb on + strand at 3570.549 kb on + strand at 3570.584 kb on + strand at 3570.600 kb on - strand at 3570.600 kb on - strand at 3570.600 kb on - strand at 3570.600 kb on - strand at 3570.604 kb on + strand at 3570.645 kb on + strand at 3570.650 kb on + strand at 3570.658 kb on - strand at 3570.705 kb on + strand at 3570.713 kb on - strand at 3571.125 kb on + strand, within BWI76_RS17240 at 3571.133 kb on - strand, within BWI76_RS17240 at 3571.138 kb on + strand, within BWI76_RS17240 at 3571.146 kb on - strand, within BWI76_RS17240 at 3571.260 kb on + strand, within BWI76_RS17240 at 3571.343 kb on + strand, within BWI76_RS17240 at 3571.487 kb on + strand, within BWI76_RS17240
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 3,568,745 - +0.8 3,568,882 + BWI76_RS17230 0.16 -0.0 3,569,244 - BWI76_RS17230 0.56 -1.1 3,569,287 - BWI76_RS17230 0.60 +0.3 3,569,301 + BWI76_RS17230 0.62 +0.7 3,569,759 - BWI76_RS17235 0.11 -1.5 3,569,917 + BWI76_RS17235 0.28 -1.3 3,569,970 + BWI76_RS17235 0.33 -0.1 3,569,985 - BWI76_RS17235 0.35 -2.2 3,570,185 - BWI76_RS17235 0.57 +0.3 3,570,250 + BWI76_RS17235 0.64 -1.9 3,570,312 - BWI76_RS17235 0.71 -1.6 3,570,367 - BWI76_RS17235 0.77 -1.9 3,570,462 + BWI76_RS17235 0.87 -1.6 3,570,492 + -1.4 3,570,492 + -0.8 3,570,549 + +0.3 3,570,549 + -1.3 3,570,549 + -0.1 3,570,584 + -1.1 3,570,600 - +0.3 3,570,600 - -0.9 3,570,600 - +0.2 3,570,600 - -0.3 3,570,604 + -0.2 3,570,645 + +0.1 3,570,650 + +0.3 3,570,658 - +0.8 3,570,705 + -0.9 3,570,713 - +0.2 3,571,125 + BWI76_RS17240 0.28 -1.0 3,571,133 - BWI76_RS17240 0.28 -0.0 3,571,138 + BWI76_RS17240 0.29 +0.4 3,571,146 - BWI76_RS17240 0.29 -1.0 3,571,260 + BWI76_RS17240 0.36 -0.4 3,571,343 + BWI76_RS17240 0.41 -0.2 3,571,487 + BWI76_RS17240 0.50 +0.0
Or see this region's nucleotide sequence