Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15925 and BWI76_RS15930 are separated by 10 nucleotides BWI76_RS15930 and BWI76_RS15935 are separated by 1 nucleotides BWI76_RS15935 and BWI76_RS15940 are separated by 41 nucleotides
BWI76_RS15925: BWI76_RS15925 - dimethyl sulfoxide reductase subunit A, at 3,302,259 to 3,304,694
_RS15925
BWI76_RS15930: BWI76_RS15930 - dimethylsulfoxide reductase, chain B, at 3,304,705 to 3,305,322
_RS15930
BWI76_RS15935: BWI76_RS15935 - dimethyl sulfoxide reductase, at 3,305,324 to 3,306,181
_RS15935
BWI76_RS15940: BWI76_RS15940 - DMSO reductase maturation protein DsmD, at 3,306,223 to 3,306,831
_RS15940
Position (kb)
3304
3305
3306 Strain fitness (log2 ratio)
-2
-1
0
1 at 3303.716 kb on + strand, within BWI76_RS15925 at 3303.748 kb on - strand, within BWI76_RS15925 at 3304.008 kb on - strand, within BWI76_RS15925 at 3304.663 kb on + strand at 3304.928 kb on + strand, within BWI76_RS15930 at 3304.928 kb on + strand, within BWI76_RS15930 at 3304.936 kb on - strand, within BWI76_RS15930 at 3304.936 kb on - strand, within BWI76_RS15930 at 3305.042 kb on + strand, within BWI76_RS15930 at 3305.723 kb on + strand, within BWI76_RS15935
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 3,303,716 + BWI76_RS15925 0.60 -0.1 3,303,748 - BWI76_RS15925 0.61 -0.1 3,304,008 - BWI76_RS15925 0.72 -1.9 3,304,663 + +0.3 3,304,928 + BWI76_RS15930 0.36 -1.5 3,304,928 + BWI76_RS15930 0.36 -0.9 3,304,936 - BWI76_RS15930 0.37 +0.0 3,304,936 - BWI76_RS15930 0.37 -0.8 3,305,042 + BWI76_RS15930 0.55 -1.0 3,305,723 + BWI76_RS15935 0.47 -1.4
Or see this region's nucleotide sequence