Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15040 and BWI76_RS15045 are separated by 92 nucleotides BWI76_RS15045 and BWI76_RS15050 overlap by 18 nucleotides
BWI76_RS15040: BWI76_RS15040 - putative 2-nitropropane dioxygenase, at 3,147,935 to 3,148,981
_RS15040
BWI76_RS15045: BWI76_RS15045 - LysR family transcriptional regulator, at 3,149,074 to 3,149,910
_RS15045
BWI76_RS15050: BWI76_RS15050 - sugar transporter, at 3,149,893 to 3,151,080
_RS15050
Position (kb)
3149
3150 Strain fitness (log2 ratio)
-2
-1
0
1 at 3148.203 kb on + strand, within BWI76_RS15040 at 3148.263 kb on + strand, within BWI76_RS15040 at 3148.302 kb on - strand, within BWI76_RS15040 at 3148.304 kb on + strand, within BWI76_RS15040 at 3148.304 kb on + strand, within BWI76_RS15040 at 3148.317 kb on + strand, within BWI76_RS15040 at 3148.389 kb on - strand, within BWI76_RS15040 at 3148.478 kb on - strand, within BWI76_RS15040 at 3148.509 kb on - strand, within BWI76_RS15040 at 3148.603 kb on + strand, within BWI76_RS15040 at 3149.322 kb on - strand, within BWI76_RS15045 at 3149.332 kb on - strand, within BWI76_RS15045 at 3149.625 kb on + strand, within BWI76_RS15045 at 3149.848 kb on - strand at 3149.989 kb on - strand at 3150.125 kb on - strand, within BWI76_RS15050 at 3150.239 kb on - strand, within BWI76_RS15050 at 3150.461 kb on + strand, within BWI76_RS15050
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 3,148,203 + BWI76_RS15040 0.26 -0.5 3,148,263 + BWI76_RS15040 0.31 +0.6 3,148,302 - BWI76_RS15040 0.35 -0.3 3,148,304 + BWI76_RS15040 0.35 -0.8 3,148,304 + BWI76_RS15040 0.35 -1.9 3,148,317 + BWI76_RS15040 0.36 -1.0 3,148,389 - BWI76_RS15040 0.43 +0.0 3,148,478 - BWI76_RS15040 0.52 -1.1 3,148,509 - BWI76_RS15040 0.55 -0.3 3,148,603 + BWI76_RS15040 0.64 -1.0 3,149,322 - BWI76_RS15045 0.30 -1.6 3,149,332 - BWI76_RS15045 0.31 -1.1 3,149,625 + BWI76_RS15045 0.66 -1.1 3,149,848 - +0.8 3,149,989 - -0.9 3,150,125 - BWI76_RS15050 0.20 -0.9 3,150,239 - BWI76_RS15050 0.29 -0.2 3,150,461 + BWI76_RS15050 0.48 -0.9
Or see this region's nucleotide sequence